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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier
Package 154/238HostnameOSArchBUILDCHECKBUILD BIN

oneChannelGUI

1.3.9

Raffaele A Calogero
Last Changed Date: 2007-06-01 02:16:24 -0700
Last Changed Rev: 25096
lamb1 Linux (SUSE 10.1) x86_64 [ ERROR ]skipped
wellington Linux (SUSE 9.2) i686  ERROR skipped
churchill Solaris 2.9 sparc  TIMEOUT skipped
lemming Windows Server 2003 (32-bit) x64  OK  WARNINGS skipped
Package: oneChannelGUI
Version: 1.3.9
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build oneChannelGUI
RetCode: 1
Time: 32.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'oneChannelGUI/DESCRIPTION' ... OK
* preparing 'oneChannelGUI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'oneChannelGUI' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affylmGUI
Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: DynDoc
** help
 >>> Building/Updating help pages for package 'oneChannelGUI'
     Formats: text html latex example 
  GOenrichment                      text    html    latex   example
  IPAlistFilter                     text    html    latex   example
  ML.edesign                        text    html    latex   example
  OpenLargefiles                    text    html    latex   example
  PLM.plots                         text    html    latex   example
  PlotOptionsv1                     text    html    latex   example
  VennDiagram                       text    html    latex   example
  delPLM                            text    html    latex   example
  dfMAplot                          text    html    latex   example
  extractAffyids                    text    html    latex   example
  inspecting.one.splice.index       text    html    latex   example
  inspecting.splice.index           text    html    latex   example
  intensityFilter                   text    html    latex   example
  iqrFilter                         text    html    latex   example
  listFilter                        text    html    latex   example
  masigpro                          text    html    latex   example
  masigpro.edesign                  text    html    latex   example
  masigpro.view                     text    html    latex   example
  myExpresso                        text    html    latex   example
  myPLM                             text    html    latex   example
  ocPlotHist                        text    html    latex   example
  ocPlotPCA                         text    html    latex   example
  oneChannelGUI-package             text    html    latex   example
  oneChannelGUI                     text    html    latex   example
  plotGO                            text    html    latex   example
  rawpCheck                         text    html    latex   example
  sample.size.evaluation            text    html    latex   example
  sample.size.evaluation1           text    html    latex   example
  showDataset                       text    html    latex   example
  showTopTable                      text    html    latex   example
  siggenes                          text    html    latex   example
  spliceIndex                       text    html    latex   example
  targetWidget                      text    html    latex   example
  templA                            text    html    latex   example
  trainTest                         text    html    latex   example
** building package indices ...
* DONE (oneChannelGUI)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affylmGUI
Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: DynDoc

Attaching package: 'oneChannelGUI'


	The following object(s) are masked from package:affylmGUI :

	 ExportNormalizedExpressionValues,
	 NewLimmaFile,
	 OpenALimmaFile,
	 OpenCDFandTargetsfiles,
	 OpenLimmaFile,
	 SaveAsLimmaFile,
	 showTopTable 


Error: processing vignette 'oneChannelGUI.Rnw' failed with diagnostics:
 chunk 2 
Error in close.connection(con) : invalid connection
In addition: Warning message:
closing unused connection 5 (gzcon(http://www.bioinformatica.unito.it/downloads/exon.sample.txt)) 
Execution halted