BioC 2.1: CHECK report for RPostgreSQL on lamb1

Package: RPostgreSQL

Version: 0.0.0

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check RPostgreSQL_0.0.0.tar.gz

RetCode: 0

Time: 9.5 seconds

Status: WARNINGS

CheckDir: RPostgreSQL.Rcheck

Warnings: 7

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'RPostgreSQL/DESCRIPTION' ... OK
* this is package 'RPostgreSQL' version '0.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RPostgreSQL' can be installed ... WARNING
Found the following significant warnings:
  WARNING: no source files found
See '/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'src' contains no source files.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
Error in sum(lens) : invalid 'type' (list) of argument
Execution halted
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... WARNING
Warning in is.na(x) :
  is.na() applied to non-(list or vector) of type 'NULL'
Error in Rd_db(package, lib.loc = lib.loc) : 
  directory '/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/RPostgreSQL' does not contain Rd objects
Execution halted
* checking for missing documentation entries ... WARNING
Warning in is.na(x) :
  is.na() applied to non-(list or vector) of type 'NULL'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... WARNING
Error in tools::codoc(package = "RPostgreSQL") : 
  directory '/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/RPostgreSQL' does not contain Rd sources
Execution halted
Error in tools::codocData(package = "RPostgreSQL") : 
  directory '/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/RPostgreSQL' does not contain Rd sources
Execution halted
Error in tools::codocClasses(package = "RPostgreSQL") : 
  directory '/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/RPostgreSQL' does not contain Rd sources
Execution halted
* checking Rd \usage sections ... WARNING
Error in tools::checkDocFiles(package = "RPostgreSQL") : 
  directory '/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/RPostgreSQL' does not contain Rd sources
Execution halted
Functions with \usage entries need to have the appropriate \alias entries,
and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating RPostgreSQL-Ex.R ... OK
* checking examples ... OK
* creating RPostgreSQL-manual.tex ... OK
* checking RPostgreSQL-manual.tex ... OK

WARNING: There were 7 warnings, see
  /home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/00check.log
for details

* Installing *source* package 'RPostgreSQL' ...
** libs
WARNING: no source files found
chmod: cannot access `/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/RPostgreSQL/libs/*': No such file or directory
** R
** inst
** help
chmod: cannot access `/home/biocbuild/bbs-2.1-bioc/meat/RPostgreSQL.Rcheck/RPostgreSQL/man/RPostgreSQL.Rd.gz': No such file or directory
 >>> Building/Updating help pages for package 'RPostgreSQL'
     Formats: text html latex example 
** building package indices ...
* DONE (RPostgreSQL)

Package 198/238	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
RPostgreSQL 0.0.0 M. Dalphin Last Changed Date: 2007-01-08 18:28:57 -0800 Last Changed Rev: 21881	lamb1	Linux (SUSE 10.1)	x86_64	OK	[ WARNINGS ]
	wellington	Linux (SUSE 9.2)	i686	OK	WARNINGS
	churchill	Solaris 2.9	sparc	OK	WARNINGS
	lemming	Windows Server 2003 (32-bit)	x64	OK	skipped	skipped

RPostgreSQL

0.0.0

Command output