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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier
Package 90/238HostnameOSArchBUILDCHECKBUILD BIN

GEOquery

2.1.7

Sean Davis
Last Changed Date: 2007-06-06 04:16:41 -0700
Last Changed Rev: 25217
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686  ERROR skipped
churchill Solaris 2.9 sparc [ ERROR ]skipped
lemming Windows Server 2003 (32-bit) x64  TIMEOUT skippedskipped
Package: GEOquery
Version: 2.1.7
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build GEOquery
RetCode: 1
Time: 10.1 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'GEOquery/DESCRIPTION' ... OK
* preparing 'GEOquery':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'GEOquery' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'GEOquery'
     Formats: text html latex example 
  GDS-class                         text    html    latex
  GDS2MA                            text    html    latex   example
  GEOData-class                     text    html    latex
  GEODataTable-class                text    html    latex
  GPL-class                         text    html    latex
  GSE-class                         text    html    latex
  GSM-class                         text    html    latex
  dataTable                         text    html    latex
  getGEO                            text    html    latex   example
  getGEOfile                        text    html    latex   example
  parseGEO                          text    html    latex
** building package indices ...
* DONE (GEOquery)
* creating vignettes ... ERROR
Loading required package: R.utils
Loading required package: R.oo
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RCurl

Error: processing vignette 'GEOquery.Rnw' failed with diagnostics:
 chunk 1 
Error : package 'RCurl' could not be loaded
In addition: Warning message:
In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
  there is no package called 'RCurl'
Execution halted