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| NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier |
| Package 63/238 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
EBImage2.1.5Oleg SklyarLast Changed Date: 2007-06-10 10:22:32 -0700 Last Changed Rev: 25301 | lamb1 | Linux (SUSE 10.1) | x86_64 | [ OK ] | OK | |
| wellington | Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
| churchill | Solaris 2.9 | sparc | OK | OK | ||
| lemming | Windows Server 2003 (32-bit) | x64 | N O T S U P P O R T E D | |||
| Package: EBImage |
| Version: 2.1.5 |
| Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build EBImage |
| RetCode: 0 |
| Time: 9.5 seconds |
| Status: OK |
| PackageFile: EBImage_2.1.5.tar.gz |
* checking for file 'EBImage/DESCRIPTION' ... OK
* preparing 'EBImage':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
ImageMagick version 6.2.5 found
checking for Magick-config... yes
ImageMagick includes located in -I/usr/include
checking for pkg-config... yes
Compiling with GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c colors.c -o colors.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c conversions.c -o conversions.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c display.c -o display.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c EBImage.c -o EBImage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_distmap.c -o filters_distmap.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_magick.c -o filters_magick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_morph.c -o filters_morph.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_normalize.c -o filters_normalize.o
g++ -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_propagate.cpp -o filters_propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_thresh.c -o filters_thresh.o
g++ -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_watershed.cpp -o filters_watershed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c io.c -o io.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c object_counting.c -o object_counting.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c object_moments.c -o object_moments.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/X11R6/include -I/usr/include/libpng12 -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c tools.c -o tools.o
g++ -shared -L/usr/local/lib64 -o EBImage.so colors.o conversions.o display.o EBImage.o filters_distmap.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o io.o object_counting.o object_moments.o tools.o -L/usr/X11R6/lib64 -L/opt/gnome/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0 -lfreetype -lfontconfig -lXrender -lX11 -lXext -lpng12 -lz -lglitz -lm -L/usr/lib64 -L/usr/lib64 -L/usr/X11R6/lib64 -lfreetype -lz -L/usr/lib -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'EBImage'
Formats: text html latex example
EBImage-package text html latex
Image.generic.methods text html latex
channel text html latex example
class.Image text html latex example
class.IndexedImage text html latex example
constructors text html latex example
denoising text html latex example
display text html latex
distmap text html latex example
enhancing text html latex
getObjects text html latex example
input-output text html latex example
internals text html latex
matchObjects text html latex
moments text html latex example
morphology text html latex example
normalize text html latex example
paintObjects text html latex example
propagate text html latex example
rmObjects text html latex example
segmenting text html latex
thresholding text html latex example
tile text html latex
transformations text html latex
watershed text html latex example
** building package indices ...
* DONE (EBImage)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'EBImage_2.1.5.tar.gz'