Package: externalVector

Version: 1.5.1

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check externalVector_1.5.1.tar.gz

RetCode: 1

Time: 38.5 seconds

Status: ERROR

CheckDir: externalVector.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/externalVector.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.5.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... ERROR
Installation failed.
See 'D:/biocbld/bbs-2.1-bioc/meat/externalVector.Rcheck/00install.out' for details.

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/externalVector.Rcheck


---------- Making package externalVector ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making allocator.d from allocator.c
making arraySummary.d from arraySummary.c
making coerce.d from coerce.c
making externalVector.d from externalVector.c
making groups.d from groups.c
making math.d from math.c
making slice.d from slice.c
making storage.d from storage.c
making subscript.d from subscript.c
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c allocator.c -o allocator.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c arraySummary.c -o arraySummary.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c coerce.c -o coerce.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c groups.c -o groups.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c math.c -o math.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c slice.c -o slice.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c storage.c -o storage.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c subscript.c -o subscript.o
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i externalVector_res.rc -o externalVector_res.o
gcc  -shared -s  -o externalVector.dll externalVector.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o externalVector_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'externalVector'
     Formats: text html latex example chm 
  NAIndex-class                     text    html    latex           chm
  SubscriptList                     text    html    latex   example chm
  Subset                            text    html    latex           chm
  allIndex-class                    text    html    latex           chm
  allNA                             text    html    latex   example chm
  allocators                        text    html    latex           chm
  as.Rvector                        text    html    latex   example chm
  asEach                            text    html    latex   example chm
  defaultElement                    text    html    latex   example chm
  exprMatrix-class                  text    html    latex           chm
  externalAllocator-class           text    html    latex           chm
  externalMatrix                    text    html    latex   example chm
  externalResource-class            text    html    latex           chm
  externalStorage-class             text    html    latex           chm
  externalVector-class              text    html    latex           chm
  externalVector                    text    html    latex   example chm
  externalVectorWithStorage-class   text    html    latex           chm
  gcAllocator-class                 text    html    latex   example chm
  getExternalStorage                text    html    latex           chm
  getNativeStorageMethods           text    html    latex           chm
  indirectExternalMatrix-class      text    html    latex           chm
  indirectExternalVector-class      text    html    latex           chm
  internalType                      text    html    latex           chm
  makeSlice                         text    html    latex   example chm
  matrixIndex-class                 text    html    latex           chm
  nativeStorageMethods-class        text    html    latex           chm
  nativeStorageMethodsList-class    text    html    latex           chm
  nonSlotAttributes                 text    html    latex           chm
  noneIndex-class                   text    html    latex           chm
  positiveIndex-class               text    html    latex           chm
  rebind                            text    html    latex           chm
  setDimNames                       text    html    latex           chm
  setExternalStorageClass           text    html    latex   example chm
  setVirtualMethod                  text    html    latex   example chm
  simpleStorage-class               text    html    latex           chm
  sliceIndex-class                  text    html    latex           chm
  union-class                       text    html    latex           chm
  var                               text    html    latex   example chm
  vectorIndex-class                 text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\externalVector.Rcheck\00_pkg_src\externalVector\chm\externalVector.chm


Compile time: 0 minutes, 0 seconds
40	Topics
532	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\externalVector.Rcheck\00_pkg_src\externalVector\chm\externalVector.chm, 83,157 bytes
Compression decreased file by 268,032 bytes.
  preparing package externalVector for lazy loading
Creating a new generic function for "match" in "externalVector"
Error in genericForPrimitive(f) : methods may not be defined for primitive function "is.finite" in this version of R
Error: unable to load R code in package 'externalVector'
Execution halted
make: *** [lazyload] Error 1
*** Installation of externalVector failed ***

Removing 'D:/biocbld/bbs-2.1-bioc/meat/externalVector.Rcheck/externalVector'