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| Package 25/28 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
simpleaffy2.10.3Crispin MillerLast Changed Date: 2007-04-26 08:22:15 -0700 Last Changed Rev: 24303 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK |
| Package: simpleaffy |
| Version: 2.10.3 |
| Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check simpleaffy_2.10.3.tar.gz |
| RetCode: 0 |
| Time: 67.6 seconds |
| Status: OK |
| CheckDir: simpleaffy.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.0-biocLite/meat/simpleaffy.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'simpleaffy/DESCRIPTION' ... OK * this is package 'simpleaffy' version '2.10.3' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'simpleaffy' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating simpleaffy-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating simpleaffy-manual.tex ... OK * checking simpleaffy-manual.tex ... OK
simpleaffy.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.0-biocLite/meat/simpleaffy.Rcheck
---------- Making package simpleaffy ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making simpleaffy.d from simpleaffy.c
gcc -Ie:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c simpleaffy.c -o simpleaffy.o
windres -I e:/biocbld/bbs-2.0-bioc/R/include -i simpleaffy_res.rc -o simpleaffy_res.o
gcc -shared -s -o simpleaffy.dll simpleaffy.def simpleaffy.o simpleaffy_res.o -Le:/biocbld/bbs-2.0-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
save image
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'simpleaffy'
Formats: text html latex example chm
PairComp-class text html latex chm
QCStats-accessor text html latex chm
QCStats-class text html latex chm
all.present text html latex example chm
all.present.in.group text html latex example chm
alpha text html latex chm
bg.correct.sa text html latex example chm
call.exprs text html latex example chm
detection.p.val text html latex example chm
get.annotation text html latex example chm
get.array.indices text html latex example chm
get.array.subset text html latex example chm
get.array.subset.affy text html latex example chm
get.fold.change.and.t.test text html latex example chm
getActin3 text html latex example chm
getActin5 text html latex example chm
getActinM text html latex example chm
getAllQCProbes text html latex example chm
getAllSpikeProbes text html latex example chm
getAlpha1 text html latex example chm
getAlpha2 text html latex example chm
getBioB text html latex example chm
getBioC text html latex example chm
getBioD text html latex example chm
getCreX text html latex example chm
getGapdh3 text html latex example chm
getGapdh5 text html latex example chm
getGapdhM text html latex example chm
getQCParams-methods text html latex chm
getTao text html latex example chm
haveQCParams text html latex example chm
hmap.colors text html latex example chm
hmap.eset text html latex example chm
hmap.pc text html latex example chm
journalpng text html latex example chm
justMAS text html latex example chm
pairwise.comparison text html latex example chm
pairwise.filter text html latex example chm
plot.pairwise.comparison text html latex example chm
plot.qc.stats text html latex example chm
qc text html latex example chm
qc.affy text html latex example chm
qc.probes text html latex chm
read.affy text html latex example chm
read.affy.mixed text html latex example chm
spikes text html latex chm
standard.pearson text html latex example chm
trad.scatter.plot text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.0-biocLite\meat\simpleaffy.Rcheck\00_pkg_src\simpleaffy\chm\simpleaffy.chm
Compile time: 0 minutes, 1 second
49 Topics
186 Local links
11 Internet links
1 Graphic
Created e:\biocbld\bbs-2.0-biocLite\meat\simpleaffy.Rcheck\00_pkg_src\simpleaffy\chm\simpleaffy.chm, 61,005 bytes
Compression decreased file by 94,690 bytes.
adding MD5 sums
* DONE (simpleaffy)