Package: tilingArray

Version: 1.11.12

Command: /loc/biocbuild/1.9d/R/bin/R CMD build tilingArray

RetCode: 0

Time: 49.0 seconds

Status: OK

PackageFile: tilingArray_1.11.12.tar.gz

* checking for file 'tilingArray/DESCRIPTION' ... OK
* preparing 'tilingArray':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'tilingArray' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c findsegments.c -o findsegments.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c sampleStep.c -o sampleStep.o
gcc -shared -L/usr/local/lib -o tilingArray.so findsegments.o sampleStep.o   
** R
** inst
** save image
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy

Loading required package: affyio

Loading required package: RColorBrewer

Loading required package: grid

Loading required package: strucchange

Loading required package: zoo


Attaching package: 'zoo'


	The following object(s) are masked from package:base :

	 rapply 

Loading required package: sandwich

Loading required package: colorspace

Creating a new generic function for 'plot' in 'colorspace'

Attaching package: 'colorspace'


	The following object(s) are masked from package:grDevices :

	 hcl 

Loading required package: vsn

Loading required package: genefilter

Loading required package: survival

Loading required package: splines

Loading required package: geneplotter

Loading required package: annotate

KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: pixmap

** help
 >>> Building/Updating help pages for package 'tilingArray'
     Formats: text html latex example 
  PMindex                           text    html    latex   example
  breakpointsPretend                text    html    latex
  class-segmentation                text    html    latex   example
  comparisonPlot                    text    html    latex   example
  costMatrix                        text    html    latex   example
  findsegments                      text    html    latex   example
  normalizeByReference              text    html    latex   example
  otherStrand                       text    html    latex   example
  plotAlongChrom                    text    html    latex   example
  plotAlongChromLegend              text    html    latex   example
  plotFeatures                      text    html    latex   example
  plotSegmentationDots              text    html    latex   example
  plotSegmentationHeatmap           text    html    latex   example
  posMin                            text    html    latex   example
  qcPlots                           text    html    latex   example
  readCel2eSet                      text    html    latex   example
  sampleStep                        text    html    latex   example
  segChrom                          text    html    latex   example
  segment                           text    html    latex   example
  tilingArray-package               text    html    latex
** building package indices ...
* DONE (tilingArray)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'tilingArray_1.11.12.tar.gz'