* checking for file 'snapCGH/DESCRIPTION' ... OK
* preparing 'snapCGH':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/hpages/1.9d/tmpdir/Rinst40455328
---------- Making package snapCGH ------------
adding build stamp to DESCRIPTION
making DLL ...
making optimizer.d from optimizer.c
gcc -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c optimizer.c -o optimizer.o
windres --include-dir e:/hpages/1.9d/R/include -i snapCGH_res.rc -o snapCGH_res.o
gcc -shared -s -o snapCGH.dll snapCGH.def optimizer.o snapCGH_res.o -Le:/hpages/1.9d/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'snapCGH'
Formats: text html latex example chm
IDProbes text html latex chm
LargeDataObject text html latex example chm
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compareSegmentations text html latex chm
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non.zero.length.distr.non.tiled text html latex chm
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Microsoft HTML Help Compiler 4.74.8702
Compiling e:\hpages\1.9d\Rpacks\snapCGH\chm\snapCGH.chm
Compile time: 0 minutes, 0 seconds
46 Topics
139 Local links
0 Internet links
1 Graphic
Created e:\hpages\1.9d\Rpacks\snapCGH\chm\snapCGH.chm, 66,684 bytes
Compression decreased file by 84,764 bytes.
preparing package snapCGH for lazy loading
Loading required package: limma
Loading required package: tilingArray
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: affy
Loading required package: affyio
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following object(s) are masked from package:base :
rapply
Loading required package: sandwich
Loading required package: colorspace
Creating a new generic function for 'plot' in 'colorspace'
Attaching package: 'colorspace'
The following object(s) are masked from package:grDevices :
hcl
Loading required package: vsn
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: pixmap
Loading required package: DNAcopy
Attaching package: 'DNAcopy'
The following object(s) are masked from package:tilingArray :
segment
Loading required package: aCGH
Loading required package: cluster
Loading required package: multtest
Loading required package: sma
Attaching package: 'aCGH'
The following object(s) are masked from package:stats :
heatmap
Loading required package: GLAD
Attaching package: 'GLAD'
The following object(s) are masked from package:survival :
cluster
adding MD5 sums
* DONE (snapCGH)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'snapCGH_1.1.7.tar.gz'