Package: beadarraySNP

Version: 0.9.7

Command: D:\biocbld\1.9d\R\bin\R.exe CMD build beadarraySNP

RetCode: 1

Time: 21.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* preparing 'beadarraySNP':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.9d/tmpdir/Rinst745614266


---------- Making package beadarraySNP ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'beadarraySNP'
     Formats: text html latex example chm 
  Datasets                          text    html    latex           chm
  GenomicReports                    text    html    latex   example chm
  PolarTransforms                   text    html    latex   example chm
  QCIllumina-class                  text    html    latex           chm
  arrayType                         text    html    latex           chm
  backgroundCorrect.SNP             text    html    latex   example chm
  backgroundEstimate                text    html    latex   example chm
  calculateQCarray                  text    html    latex   example chm
  class.SnpSetIllumina              text    html    latex           chm
  compareGenotypes                  text    html    latex   example chm
  heterozygosity                    text    html    latex   example chm
  heterozygousSNPs                  text    html    latex   example chm
  normalizeBetweenAlleles.SNP       text    html    latex   example chm
  normalizeLoci.SNP                 text    html    latex   example chm
  normalizeWithinArrays.SNP         text    html    latex   example chm
  pdfChromosomesSmoothCopyNumber    text    html    latex   example chm
  pdfQC                             text    html    latex           chm
  plotQC                            text    html    latex   example chm
  read.SnpSetIllumina               text    html    latex   example chm
  removeLowQualityProbes            text    html    latex           chm
  removeLowQualitySamples           text    html    latex   example chm
  reportSamplePanelQC-methods       text    html    latex   example chm
  standardNormalization             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\1.9d\Rpacks\beadarraySNP\chm\beadarraySNP.chm





Compile time: 0 minutes, 0 seconds

24	Topics

110	Local links

0	Internet links

1	Graphic





Created d:\biocbld\1.9d\Rpacks\beadarraySNP\chm\beadarraySNP.chm, 43,533 bytes

Compression decreased file by 44,315 bytes.

  preparing package beadarraySNP for lazy loading
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: limma

Loading required package: quantsmooth

Loading required package: quantreg

Loading required package: lodplot

Loading required package: grid

Error in parse(file, n, text, prompt) : syntax error at
967:       if (verbose) cat(colname)
968:       if colname
Error: unable to load R code in package 'beadarraySNP'
Execution halted
make: *** [lazyload] Error 1
*** Installation of beadarraySNP failed ***

Removing 'D:/biocbld/1.9d/tmpdir/Rinst745614266/beadarraySNP'
 ERROR
Installation failed.
Removing 'D:/biocbld/1.9d/tmpdir/Rinst745614266'