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| Package 73/205 | OS | Arch | BUILD | CHECK | BUILD BIN |
GEOquery1.7.3Sean Davis | Linux (SUSE 9.2) | x86_64 | OK | [ WARNINGS ] | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | WARNINGS | ||
| Linux (SUSE 10.0) | x86_64 | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | WARNINGS | OK | |
| Windows XP | i686 | OK | WARNINGS | skipped | |
| Mac OS X (10.4.6) | i686 | OK | WARNINGS |
| Package: GEOquery |
| Version: 1.7.3 |
| Command: /loc/biocbuild/1.9d/R/bin/R CMD check GEOquery_1.7.3.tar.gz |
| RetCode: 0 |
| Time: 110.2 seconds |
| Status: WARNINGS |
| CheckDir: GEOquery.Rcheck |
| Warnings: 4 |
* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/GEOquery.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'GEOquery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GEOquery' version '1.7.3'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GEOquery' can be installed ... WARNING
Found the following significant warnings:
missing link(s): dataTable-class
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... WARNING
Error in eval(expr, envir, enclos) : could not find function "setClass"
Error: unable to load R code in package 'GEOquery'
Execution halted
A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... WARNING
Missing link(s) in documentation object 'GEOData-class.Rd':
dataTable-class
* checking for missing documentation entries ... WARNING
Undocumented code objects:
Accession Columns dataTable GPLList GSMList Meta Table
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GEOquery-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GEOquery-manual.tex ... OK
* checking GEOquery-manual.tex ... OK
WARNING: There were 4 warnings, see
/loc/biocbuild/1.9d/Rpacks/GEOquery.Rcheck/00check.log
for details
GEOquery.Rcheck/00install.out:
* Installing *source* package 'GEOquery' ...
** R
** inst
** help
>>> Building/Updating help pages for package 'GEOquery'
Formats: text html latex example
GDS-class text html latex
GDS2MA text html latex example
GEOData-class text html latex
missing link(s): dataTable-class
GEODataTable-class text html latex
GPL-class text html latex
GSE-class text html latex
GSM-class text html latex
getGEO text html latex example
getGEOfile text html latex example
parseGEO text html latex
** building package indices ...
* DONE (GEOquery)