Back to the "Multiple platform build/check report"
| Package 62/205 | OS | Arch | BUILD | CHECK | BUILD BIN |
gcrma2.5.1Z. Wu | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Linux (SUSE 10.0) | x86_64 | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | WARNINGS | OK | |
| Windows XP | i686 | OK | WARNINGS | skipped | |
| Mac OS X (10.4.6) | i686 | OK | [ WARNINGS ] |
| Package: gcrma |
| Version: 2.5.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check gcrma_2.5.1.tar.gz |
| RetCode: 0 |
| Time: 227.8 seconds |
| Status: WARNINGS |
| CheckDir: gcrma.Rcheck |
| Warnings: 1 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/1.9d/Rpacks/gcrma.Rcheck' * using R version 2.4.0 alpha (2006-09-07 r39185) * checking for file 'gcrma/DESCRIPTION' ... OK * this is package 'gcrma' version '2.5.1' * checking package dependencies ... WARNING '::' or ':::' imports not declared from Biobase See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'gcrma' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating gcrma-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating gcrma-manual.tex ... OK * checking gcrma-manual.tex ... OK WARNING: There was 1 warning, see /Users/biocbuild/1.9d/Rpacks/gcrma.Rcheck/00check.log for details
gcrma.Rcheck/00install.out:
* Installing *source* package 'gcrma' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c baseProfile.c -o baseProfile.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c computeAffinities.c -o computeAffinities.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c postmean.c -o postmean.o
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gcrma.so baseProfile.o computeAffinities.o postmean.o -L/Library/Frameworks/R.framework/Resources/lib/i386 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib
** arch - ppc
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c baseProfile.c -o baseProfile.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c computeAffinities.c -o computeAffinities.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c postmean.c -o postmean.o
gcc-4.0 -arch ppc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gcrma.so baseProfile.o computeAffinities.o postmean.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: affyio
Loading required package: matchprobes
** help
>>> Building/Updating help pages for package 'gcrma'
Formats: text html latex example
affinity.spline.coefs text html latex
bg.adjust.affinities text html latex
bg.adjust.gcrma text html latex example
bg.parameters.ns text html latex
compute.affinities text html latex
fast.bkg text html latex
gcrma text html latex example
gcrma.engine text html latex example
gcrma.engine2 text html latex example
getCDF text html latex
justGCRMA text html latex example
** building package indices ...
* DONE (gcrma)