* checking for file 'goTools/DESCRIPTION' ... OK
* preparing 'goTools':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'goTools' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: annotate
Loading required package: GO
** help
>>> Building/Updating help pages for package 'goTools'
Formats: text html latex example
EndNodeList text html latex example
goTools-internal text html latex
ontoCompare text html latex example
probeID text html latex
** building package indices ...
* DONE (goTools)
* creating vignettes ... ERROR
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
[1] "Starting ontoCompare..."
[1] "Number of lists > 1"
[1] "Using method: TGenes"
[1] "Starting ontoCompare..."
[1] "Number of lists > 1"
[1] "Using method: TGenes"
[1] "Starting ontoCompare..."
[1] 60160 2
[1] "Number of lists = 1"
[1] "Using method: TIDS"
[1] "Starting ontoCompare..."
[1] 60160 2
[1] "Number of lists = 1"
[1] "Using method: TIDS"
/loc/biocbuild/1.9d/R/bin/texi2dvi: pdflatex exited with bad status, quitting.
/loc/biocbuild/1.9d/R/bin/texi2dvi: see goTools.log for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
running texi2dvi on 'goTools.tex' failed
Execution halted