| checkOutputQuality | Check that the output data is properly formatted. |
| grabMSdata | Grab mass-spectrometry data from file(s) |
| grabMzmlBPC | Grab the BPC or TIC from a file |
| grabMzmlData | Get mass-spectrometry data from an mzML file |
| grabMzmlEncodingData | Helper function to extract mzML file encoding data |
| grabMzmlMetadata | Helper function to extract mzML file metadata |
| grabMzmlMS1 | Extract the MS1 data from an mzML nodeset |
| grabMzmlMS2 | Extract the MS2 data from an mzML nodeset |
| grabMzxmlBPC | Grab the BPC or TIC from a file |
| grabMzxmlData | Get mass-spectrometry data from an mzXML file |
| grabMzxmlEncodingData | Helper function to extract mzXML file metadata |
| grabMzxmlMetadata | Helper function to extract mzXML file metadata |
| grabMzxmlMS1 | Extract the MS1 data from an mzXML nodeset |
| grabMzxmlMS2 | Extract the MS2 data from an mzXML nodeset |
| grabMzxmlSpectraMzInt | Extract the mass-to-charge data from the spectra of an mzXML nodeset |
| grabMzxmlSpectraPremz | Extract the precursor mass from the spectra of an mzXML nodeset |
| grabMzxmlSpectraRt | Extract the retention time from the spectra of an mzXML nodeset |
| grabMzxmlSpectraVoltage | Extract the collison energies from the spectra of an mzXML nodeset |
| grabSpectraInt | Extract the intensity information from the spectra of an mzML nodeset |
| grabSpectraMz | Extract the mass-to-charge data from the spectra of an mzML nodeset |
| grabSpectraPremz | Extract the precursor mass from the spectra of an mzML nodeset |
| grabSpectraRt | Extract the retention time from the spectra of an mzML nodeset |
| grabSpectraVoltage | Extract the collison energies from the spectra of an mzML nodeset |
| pmppm | Plus/minus parts per million |