Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/Ibex

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

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Package: Ibex

Version: 0.99.21

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Ibex

BuildTime: 0 minutes 48.80 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: Ibex_20250611162933

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: Ibex. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file Ibex/DESCRIPTION ... OK
* preparing Ibex:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building Ibex.Rmd using knitr

Quitting from Ibex.Rmd:278-300 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `lock()`:
! Directory of lock file does not exist: '/var/cache/basilisk'
---
Backtrace:
    
 1. Ibex::Ibex.matrix(...)
 2.   basilisk::basiliskRun(...)
 3.     basilisk::basiliskStart(...)
 4.       basilisk::obtainEnvironmentPath(env)
 5.         basilisk::lockExternalDir(exdir, exclusive = FALSE)
 6.           dir.expiry::lockDirectory(path, ...)
 7.             filelock::lock(plock, exclusive = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Ibex.Rmd' failed with diagnostics:
Directory of lock file does not exist: '/var/cache/basilisk'
--- failed re-building Ibex.Rmd

SUMMARY: processing the following file failed:
  Ibex.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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