Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/HoloFoodR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: HoloFoodR

Version: 0.99.2

RVersion: 4.4

BiocVersion: 3.19

BuildCommand: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HoloFoodR

BuildTime: 2 minutes 7.89 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: HoloFoodR_20240328162804

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: HoloFoodR. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file HoloFoodR/DESCRIPTION ... OK
* preparing HoloFoodR:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building HoloFoodR.Rmd using rmarkdown

Quitting from lines 224-231 [get_metabolomics] (HoloFoodR.Rmd)
Error: processing vignette 'HoloFoodR.Rmd' failed with diagnostics:
cannot open URL 'http://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public//MTBLS6988/s_MTBLS6988.txt'
--- failed re-building HoloFoodR.Rmd

SUMMARY: processing the following file failed:
  HoloFoodR.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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