To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IPPD")

In most cases, you don't need to download the package archive at all.

IPPD

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see IPPD.

Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching

Bioconductor version: 2.12

The package provides functionality to extract isotopic peak patterns from raw mass spectra. This is done by fitting a large set of template basis functions to the raw spectrum using either nonnegative least squares or least absolute deviation fittting. The package offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the data. The package also provides functionality to process LCMS runs.

Author: Martin Slawski <ms at cs.uni-saarland.de>, Rene Hussong <rene.hussong at uni.lu>, Matthias Hein <hein at cs.uni-saarland.de>

Maintainer: Martin Slawski <ms at cs.uni-saarland.de>

Citation (from within R, enter citation("IPPD")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IPPD")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IPPD")

 

PDF R Script IPPD Manual
PDF templatedetail.pdf
PDF templates.pdf
PDF   Reference Manual

Details

biocViews Proteomics, Software
Version 1.8.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL (version 2 or later)
Depends R (>= 2.12.0), MASS, Matrix, XML, digest, bitops
Imports methods, stats, graphics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me RforProteomics
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source IPPD_1.8.0.tar.gz
Windows Binary IPPD_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) IPPD_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/IPPD/tree/release-2.12
Package Short Url http://bioconductor.org/packages/IPPD/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center