ternarynet

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ternarynet.

Ternary Network Estimation


Bioconductor version: 3.9

A computational Bayesian approach to ternary gene regulatory network estimation from gene perturbation experiments.

Author: Matthew N. McCall <mccallm at gmail.com>, Anthony Almudevar <Anthony_Almudevar at urmc.rochester.edu>, David Burton <David_Burton at urmc.rochester.edu>, Harry Stern <harry.stern at rochester.edu>

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Citation (from within R, enter citation("ternarynet")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ternarynet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ternarynet")
ternarynet: A Computational Bayesian Approach to Ternary Network Estimation PDF R Script
Reference Manual PDF

Details

biocViews CellBiology, GraphAndNetwork, Software
Version 1.28.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License GPL (>= 2)
Depends R (>= 2.10.0), methods
Imports utils, igraph
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ternarynet_1.28.0.tar.gz
Windows Binary ternarynet_1.28.0.zip
Mac OS X 10.11 (El Capitan) ternarynet_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ternarynet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ternarynet
Bioc Package Browser https://code.bioconductor.org/browse/ternarynet/
Package Short Url https://bioconductor.org/packages/ternarynet/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive