similaRpeak

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see similaRpeak.

Metrics to estimate a level of similarity between two ChIP-Seq profiles


Bioconductor version: 3.9

This package calculates metrics which assign a level of similarity between ChIP-Seq profiles.

Author: Astrid Deschenes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]

Maintainer: Astrid Deschenes <adeschen at hotmail.com>

Citation (from within R, enter citation("similaRpeak")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("similaRpeak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("similaRpeak")
Similarity between two ChIP-Seq profiles HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends R6 (>= 2.0)
Imports stats
System Requirements
URL https://github.com/adeschen/similaRpeak
Bug Reports https://github.com/adeschen/similaRpeak/issues
See More
Suggests RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments, rtracklayer, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me metagene, metagene
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package similaRpeak_1.16.0.tar.gz
Windows Binary similaRpeak_1.16.0.zip
Mac OS X 10.11 (El Capitan) similaRpeak_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/similaRpeak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/similaRpeak
Bioc Package Browser https://code.bioconductor.org/browse/similaRpeak/
Package Short Url https://bioconductor.org/packages/similaRpeak/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive