savR

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see savR.

Parse and analyze Illumina SAV files


Bioconductor version: 3.9

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Citation (from within R, enter citation("savR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("savR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("savR")
Using savR PDF R Script
Reference Manual PDF

Details

biocViews Sequencing, Software
Version 1.22.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License AGPL-3
Depends ggplot2
Imports methods, reshape2, scales, gridExtra, XML
System Requirements
URL https://github.com/bcalder/savR
Bug Reports https://github.com/bcalder/savR/issues
See More
Suggests Cairo, testthat
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package savR_1.22.0.tar.gz
Windows Binary savR_1.22.0.zip
Mac OS X 10.11 (El Capitan) savR_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/savR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/savR
Bioc Package Browser https://code.bioconductor.org/browse/savR/
Package Short Url https://bioconductor.org/packages/savR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive