pkgDepTools

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pkgDepTools.

Package Dependency Tools


Bioconductor version: 3.9

This package provides tools for computing and analyzing dependency relationships among R packages. It provides tools for building a graph-based representation of the dependencies among all packages in a list of CRAN-style package repositories. There are also utilities for computing installation order of a given package. If the RCurl package is available, an estimate of the download size required to install a given package and its dependencies can be obtained.

Author: Seth Falcon [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("pkgDepTools")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pkgDepTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pkgDepTools")
How to Use pkgDepTools PDF R Script
Reference Manual PDF

Details

biocViews GraphAndNetwork, Infrastructure, Software
Version 1.50.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL-2
Depends methods, graph, RBGL
Imports graph, RBGL
System Requirements
URL
See More
Suggests Biobase, Rgraphviz, RCurl, BiocManager
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pkgDepTools_1.50.0.tar.gz
Windows Binary pkgDepTools_1.50.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) pkgDepTools_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pkgDepTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pkgDepTools
Bioc Package Browser https://code.bioconductor.org/browse/pkgDepTools/
Package Short Url https://bioconductor.org/packages/pkgDepTools/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive