miRNApath

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see miRNApath.

miRNApath: Pathway Enrichment for miRNA Expression Data


Bioconductor version: 3.9

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

Author: James M. Ward <jmw86069 at gmail.com> with contributions from Yunling Shi, Cindy Richards, John P. Cogswell

Maintainer: James M. Ward <jmw86069 at gmail.com>

Citation (from within R, enter citation("miRNApath")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miRNApath")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNApath")
miRNApath: Pathway Enrichment for miRNA Expression Data PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, DifferentialExpression, NetworkEnrichment, Pathways, Software, miRNA
Version 1.44.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License LGPL-2.1
Depends methods, R (>= 2.7.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRNApath_1.44.0.tar.gz
Windows Binary miRNApath_1.44.0.zip
Mac OS X 10.11 (El Capitan) miRNApath_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRNApath
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRNApath
Bioc Package Browser https://code.bioconductor.org/browse/miRNApath/
Package Short Url https://bioconductor.org/packages/miRNApath/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive