methVisual

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see methVisual.

Methods for visualization and statistics on DNA methylation data


Bioconductor version: 3.9

The package 'methVisual' allows the visualization of DNA methylation data after bisulfite sequencing.

Author: A. Zackay, C. Steinhoff

Maintainer: Arie Zackay <arie.zackay at mail.huji.ac.il>

Citation (from within R, enter citation("methVisual")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methVisual")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methVisual")
Introduction to methVisual PDF R Script
Reference Manual PDF

Details

biocViews Classification, Clustering, DNAMethylation, Software
Version 1.36.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License GPL (>= 2)
Depends R (>= 2.11.0), Biostrings(>= 2.4.8), plotrix, gsubfn, grid, sqldf
Imports Biostrings, ca, graphics, grDevices, grid, gridBase, IRanges, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methVisual_1.36.0.tar.gz
Windows Binary methVisual_1.36.0.zip
Mac OS X 10.11 (El Capitan) methVisual_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methVisual
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methVisual
Bioc Package Browser https://code.bioconductor.org/browse/methVisual/
Package Short Url https://bioconductor.org/packages/methVisual/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive