globalSeq

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see globalSeq.

Global Test for Counts


Bioconductor version: 3.9

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.

Author: Armin Rauschenberger [aut, cre]

Maintainer: Armin Rauschenberger <a.rauschenberger at vumc.nl>

Citation (from within R, enter citation("globalSeq")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("globalSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globalSeq")
article frame HTML
vignette frame HTML
vignette source PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA
Version 1.12.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-3
Depends R (>= 3.5.0)
Imports
System Requirements
URL https://github.com/rauschenberger/globalSeq
Bug Reports https://github.com/rauschenberger/globalSeq/issues
See More
Suggests knitr, testthat, SummarizedExperiment, S4Vectors
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package globalSeq_1.12.0.tar.gz
Windows Binary globalSeq_1.12.0.zip
Mac OS X 10.11 (El Capitan) globalSeq_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/globalSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/globalSeq
Bioc Package Browser https://code.bioconductor.org/browse/globalSeq/
Package Short Url https://bioconductor.org/packages/globalSeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive