discordant

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see discordant.

The Discordant Method: A Novel Approach for Differential Correlation


Bioconductor version: 3.9

Discordant is a method to determine differential correlation of molecular feature pairs from -omics data using mixture models. Algorithm is explained further in Siska et al.

Author: Charlotte Siska [cre,aut], Katerina Kechris [aut]

Maintainer: Charlotte Siska <siska.charlotte at gmail.com>

Citation (from within R, enter citation("discordant")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("discordant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("discordant")
Discordant PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiologicalQuestion, Genetics, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod, mRNAMicroarray
Version 1.8.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports Biobase, stats, biwt, gtools, MASS, tools
System Requirements
URL https://github.com/siskac/discordant
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Suggests BiocStyle, knitr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package discordant_1.8.0.tar.gz
Windows Binary discordant_1.8.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) discordant_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/discordant
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/discordant
Bioc Package Browser https://code.bioconductor.org/browse/discordant/
Package Short Url https://bioconductor.org/packages/discordant/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive