diffcoexp

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see diffcoexp.

Differential Co-expression Analysis


Bioconductor version: 3.9

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Author: Wenbin Wei, Sandeep Amberkar, Winston Hide

Maintainer: Wenbin Wei <W.Wei at sheffield.ac.uk>

Citation (from within R, enter citation("diffcoexp")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("diffcoexp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diffcoexp")
About diffcoexp PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Coverage, DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel
Version 1.4.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL (>2)
Depends R (>= 3.5), WGCNA, SummarizedExperiment
Imports stats, DiffCorr, psych, igraph, BiocGenerics
System Requirements
URL https://github.com/hidelab/diffcoexp
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Suggests GEOquery
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package diffcoexp_1.4.0.tar.gz
Windows Binary diffcoexp_1.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) diffcoexp_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/diffcoexp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diffcoexp
Bioc Package Browser https://code.bioconductor.org/browse/diffcoexp/
Package Short Url https://bioconductor.org/packages/diffcoexp/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive