affypdnn

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affypdnn.

Probe Dependent Nearest Neighbours (PDNN) for the affy package


Bioconductor version: 3.9

The package contains functions to perform the PDNN method described by Li Zhang et al.

Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

Maintainer: Laurent Gautier<lgautier at gmail.com>

Citation (from within R, enter citation("affypdnn")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affypdnn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affypdnn")
affypdnn PDF R Script
Reference Manual PDF

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.58.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License LGPL
Depends R (>= 2.13.0), affy(>= 1.5)
Imports
System Requirements
URL
See More
Suggests affydata, hgu95av2probe
Linking To
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affypdnn_1.58.0.tar.gz
Windows Binary affypdnn_1.58.0.zip
Mac OS X 10.11 (El Capitan) affypdnn_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affypdnn
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affypdnn
Bioc Package Browser https://code.bioconductor.org/browse/affypdnn/
Package Short Url https://bioconductor.org/packages/affypdnn/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive