RnaSeqSampleSize

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RnaSeqSampleSize.

RnaSeqSampleSize


Bioconductor version: 3.9

RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data

Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

Maintainer: Shilin Zhao <zhaoshilin at gmail.com>

Citation (from within R, enter citation("RnaSeqSampleSize")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RnaSeqSampleSize")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RnaSeqSampleSize")
RnaSeqSampleSize: Sample size estimation by real data PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, ExperimentalDesign, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL (>= 2)
Depends R (>= 2.10), RnaSeqSampleSizeData
Imports biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2)
System Requirements
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Suggests BiocStyle, knitr
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RnaSeqSampleSize_1.16.0.tar.gz
Windows Binary RnaSeqSampleSize_1.16.0.zip
Mac OS X 10.11 (El Capitan) RnaSeqSampleSize_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RnaSeqSampleSize
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RnaSeqSampleSize
Bioc Package Browser https://code.bioconductor.org/browse/RnaSeqSampleSize/
Package Short Url https://bioconductor.org/packages/RnaSeqSampleSize/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive