OmicsLonDA

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OmicsLonDA.

Omics Longitudinal Differential Analysis


Bioconductor version: 3.9

Statistical method that provides robust identification of time intervals where omics features (such as proteomics, lipidomics, metabolomics, transcriptomics, microbiome, as well as physiological parameters captured by wearable sensors such as heart rhythm, body temperature, and activity level) are significantly different between groups.

Author: Ahmed A. Metwally, Tom Zhang, Michael Snyder

Maintainer: Ahmed A. Metwally <ametwall at stanford.edu>

Citation (from within R, enter citation("OmicsLonDA")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OmicsLonDA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmicsLonDA")
OmicsLonDA Package HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Lipidomics, Metabolomics, Microbiome, Proteomics, Regression, Software, Survival, TimeCourse, Transcriptomics
Version 1.0.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License MIT + file LICENSE
Depends R (>= 3.6)
Imports SummarizedExperiment, gss, plyr, zoo, pracma, ggplot2, BiocParallel, parallel, grDevices, graphics, stats, utils, methods, BiocGenerics
System Requirements
URL https://github.com/aametwally/OmicsLonDA
Bug Reports https://github.com/aametwally/OmicsLonDA/issues
See More
Suggests knitr, rmarkdown, testthat, devtools, BiocManager
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OmicsLonDA_1.0.0.tar.gz
Windows Binary OmicsLonDA_1.0.0.zip
Mac OS X 10.11 (El Capitan) OmicsLonDA_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OmicsLonDA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OmicsLonDA
Bioc Package Browser https://code.bioconductor.org/browse/OmicsLonDA/
Package Short Url https://bioconductor.org/packages/OmicsLonDA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive