MetaNeighbor

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MetaNeighbor.

Single cell replicability analysis


Bioconductor version: 3.9

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]

Maintainer: Manthan Shah <shah at cshl.edu>

Citation (from within R, enter citation("MetaNeighbor")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaNeighbor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaNeighbor")
MetaNeighbor user guide PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics
Version 1.4.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License MIT + file LICENSE
Depends R (>= 3.5)
Imports beanplot (>= 1.2), GenomicRanges(>= 1.34.0), gplots (>= 3.0.1), Matrix (>= 1.2), matrixStats (>= 0.54), Rcpp, RColorBrewer (>= 1.1), stats (>= 3.4), SummarizedExperiment(>= 1.12), utils (>= 3.4)
System Requirements
URL
See More
Suggests knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2)
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaNeighbor_1.4.0.tar.gz
Windows Binary MetaNeighbor_1.4.0.zip
Mac OS X 10.11 (El Capitan) MetaNeighbor_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaNeighbor
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaNeighbor
Bioc Package Browser https://code.bioconductor.org/browse/MetaNeighbor/
Package Short Url https://bioconductor.org/packages/MetaNeighbor/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive