MDTS

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MDTS.

Detection of de novo deletion in targeted sequencing trios


Bioconductor version: 3.9

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Author: Jack M.. Fu [aut, cre]

Maintainer: Jack M.. Fu <jmfu at jhsph.edu>

Citation (from within R, enter citation("MDTS")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MDTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MDTS")
Title of your vignette HTML R Script
Reference Manual PDF

Details

biocViews Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology
Version 1.4.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MDTS_1.4.0.tar.gz
Windows Binary MDTS_1.4.0.zip
Mac OS X 10.11 (El Capitan) MDTS_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MDTS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MDTS
Bioc Package Browser https://code.bioconductor.org/browse/MDTS/
Package Short Url https://bioconductor.org/packages/MDTS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive