GOSim

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GOSim.

Computation of functional similarities between GO terms and gene products; GO enrichment analysis


Bioconductor version: 3.9

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Citation (from within R, enter citation("GOSim")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GOSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSim")
GOsim PDF R Script
Reference Manual PDF

Details

biocViews Clustering, GO, Pathways, Software
Version 1.22.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>= 2)
Depends GO.db, annotate
Imports org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp
System Requirements
URL
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Suggests
Linking To Rcpp
Enhances igraph
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GOSim_1.22.0.tar.gz
Windows Binary GOSim_1.22.0.zip
Mac OS X 10.11 (El Capitan) GOSim_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GOSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOSim
Bioc Package Browser https://code.bioconductor.org/browse/GOSim/
Package Short Url https://bioconductor.org/packages/GOSim/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive