DEDS

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DEDS.

Differential Expression via Distance Summary for Microarray Data


Bioconductor version: 3.9

This library contains functions that calculate various statistics of differential expression for microarray data, including t statistics, fold change, F statistics, SAM, moderated t and F statistics and B statistics. It also implements a new methodology called DEDS (Differential Expression via Distance Summary), which selects differentially expressed genes by integrating and summarizing a set of statistics using a weighted distance approach.

Author: Yuanyuan Xiao <yxiao at itsa.ucsf.edu>, Jean Yee Hwa Yang <jeany at maths.usyd.edu.au>.

Maintainer: Yuanyuan Xiao <yxiao at itsa.ucsf.edu>

Citation (from within R, enter citation("DEDS")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEDS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEDS")
DEDS.pdf PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, Software
Version 1.58.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License LGPL
Depends R (>= 1.7.0)
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DEDS_1.58.0.tar.gz
Windows Binary DEDS_1.58.0.zip
Mac OS X 10.11 (El Capitan) DEDS_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DEDS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DEDS
Bioc Package Browser https://code.bioconductor.org/browse/DEDS/
Package Short Url https://bioconductor.org/packages/DEDS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive