ArrayExpress

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet


Bioconductor version: 3.9

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert

Maintainer: Suhaib Mohammed <suhaib at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")
ArrayExpress: Import and convert ArrayExpress data sets into R object PDF R Script
Reference Manual PDF

Details

biocViews DataImport, Microarray, OneChannel, Software, TwoChannel
Version 1.44.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License Artistic-2.0
Depends R (>= 2.9.0), Biobase(>= 2.4.0)
Imports XML, oligo, limma
System Requirements
URL
See More
Suggests affy
Linking To
Enhances
Depends On Me DrugVsDisease, maEndToEnd
Imports Me
Suggests Me gCMAPWeb, Hiiragi2013
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ArrayExpress_1.44.0.tar.gz
Windows Binary ArrayExpress_1.44.0.zip
Mac OS X 10.11 (El Capitan) ArrayExpress_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ArrayExpress
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ArrayExpress
Bioc Package Browser https://code.bioconductor.org/browse/ArrayExpress/
Package Short Url https://bioconductor.org/packages/ArrayExpress/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive