tidySummarizedExperiment

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see tidySummarizedExperiment.

Brings SummarizedExperiment to the Tidyverse


Bioconductor version: 3.15

tidySummarizedExperiment is an adapter that abstracts the 'SummarizedExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidySummarizedExperiment")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tidySummarizedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidySummarizedExperiment")
Overview of the tidySummarizedExperiment package HTML R Script
Reference Manual PDF

Details

biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 1.6.1
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0.0), SummarizedExperiment
Imports tibble (>= 3.0.4), dplyr, magrittr, tidyr, ggplot2, rlang, purrr, lifecycle, methods, plotly, utils, S4Vectors, tidyselect, ellipsis, vctrs, pillar, stringr, cli, fansi
System Requirements
URL https://github.com/stemangiola/tidySummarizedExperiment
Bug Reports https://github.com/stemangiola/tidySummarizedExperiment/issues
See More
Suggests BiocStyle, testthat, knitr, markdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me tidybulk
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tidySummarizedExperiment_1.6.1.tar.gz
Windows Binary tidySummarizedExperiment_1.6.1.zip
macOS Binary (x86_64) tidySummarizedExperiment_1.6.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/tidySummarizedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidySummarizedExperiment
Bioc Package Browser https://code.bioconductor.org/browse/tidySummarizedExperiment/
Package Short Url https://bioconductor.org/packages/tidySummarizedExperiment/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive