tidyFlowCore

This is the development version of tidyFlowCore; to use it, please install the devel version of Bioconductor.

tidyFlowCore: Bringing flowCore to the tidyverse

Bioconductor version: Development (3.20)

tidyFlowCore bridges the gap between flow cytometry analysis using the flowCore Bioconductor package and the tidy data principles advocated by the tidyverse. It provides a suite of dplyr-, ggplot2-, and tidyr-like verbs specifically designed for working with flowFrame and flowSet objects as if they were tibbles; however, your data remain flowCore data structures under this layer of abstraction. tidyFlowCore enables intuitive and streamlined analysis workflows that can leverage both the Bioconductor and tidyverse ecosystems for cytometry data.

Author: Timothy Keyes [cre] , Kara Davis [rth, own], Garry Nolan [rth, own]

Maintainer: Timothy Keyes <tkeyes at stanford.edu>

Citation (from within R, enter citation("tidyFlowCore")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tidyFlowCore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidyFlowCore")

tidyFlowCore	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FlowCytometry, Infrastructure, SingleCell, Software
Version	0.99.2
In Bioconductor since	BioC 3.20 (R-4.4)
License	MIT + file LICENSE
Depends	R (>= 4.3)
Imports	Biobase, dplyr, flowCore, ggplot2, methods, purrr, rlang, stats, stringr, tibble, tidyr
System Requirements
URL	https://github.com/keyes-timothy/tidyFlowCore https://keyes-timothy.github.io/tidyFlowCore/
Bug Reports	https://github.com/keyes-timothy/tidyFlowCore/issues

Suggests	BiocStyle, HDCytoData, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tidyFlowCore_0.99.2.tar.gz
Windows Binary	tidyFlowCore_0.99.2.zip
macOS Binary (x86_64)	tidyFlowCore_0.99.2.tgz
macOS Binary (arm64)	tidyFlowCore_0.99.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tidyFlowCore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tidyFlowCore
Bioc Package Browser	https://code.bioconductor.org/browse/tidyFlowCore/
Package Short Url	https://bioconductor.org/packages/tidyFlowCore/
Package Downloads Report	Download Stats