| SigCheck-package | Check a gene signature's survival and/or classification performance against random signatures, known signatures, and permuted data/metadata. |
| classifyResults | Precomputed list of results for a calls to 'sigCheckRandom' and 'sigCheckKnown' using the 'breastCancerNKI' dataset. |
| knownSignatures | Previously identified gene signatures for use in 'sigCheckKnown' |
| nkiResults | Precomputed list of results for a call to 'sigCheckAll' using the 'breastCancerNKI' dataset. |
| resultsNKI | Previously identified gene signatures for use in 'sigCheckKnown' |
| SigCheck | Check a gene signature's survival and/or classification performance against random signatures, known signatures, and permuted data/metadata. |
| sigCheck | Create a 'SigCheckObject' and establish baseline performance. |
| sigCheckAll | Run a default set of checks on a gene signature. |
| sigCheckKnown | Check signature performance against a panel of known signatures. |
| SigCheckObject | Class '"SigCheckObject"' |
| SigCheckObject-class | Class '"SigCheckObject"' |
| sigCheckPermuted | Check signature performance against performance on randomly permuted data. |
| sigCheckPlot | Plot results of a signature check or set of checks |
| sigCheckRandom | Check signature performance against signatures composed of randomly selected features |