zebrafishRNASeq

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see zebrafishRNASeq.

Zebrafish RNA-Seq Experimental Data from Ferreira et al. (2014)


Bioconductor version: 3.9

Gene-level read counts from RNA-Seq for gallein-treated and control zebrafish.

Author: Davide Risso

Maintainer: Davide Risso <risso.davide at gmail.com>

Citation (from within R, enter citation("zebrafishRNASeq")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("zebrafishRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("zebrafishRNASeq")
Pre-Processing for the Zebrafish RNA-Seq Gene-Level Counts PDF R Script
Reference Manual PDF

Details

biocViews Danio_rerio_Data, ExperimentData, RNASeqData
Version 1.4.0
License GPL
Depends R (>= 2.10)
Imports
System Requirements
URL
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Suggests BiocStyle, knitr
Linking To
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Depends On Me
Imports Me
Suggests Me RUVSeq, sva
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package zebrafishRNASeq_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/zebrafishRNASeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/zebrafishRNASeq
Package Short Url https://bioconductor.org/packages/zebrafishRNASeq/
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