mitoODEdata

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mitoODEdata.

Experimental data associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" (submitted).


Bioconductor version: 3.9

This package contains the experimental data (assay annotation, siRNA annotation, time-lapse cell counts) associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" (submitted). The data ultimately come from the Mitocheck assay reported in "Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes" (Neumann, Walter et al, Nature 2010).

Author: Gregoire Pau

Maintainer: Gregoire Pau <pau.gregoire at gene.com>

Citation (from within R, enter citation("mitoODEdata")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mitoODEdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mitoODEdata")
Mitoode data PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Genome
Version 1.20.0
License LGPL
Depends R (>= 2.14.0)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me mitoODE
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mitoODEdata_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/mitoODEdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mitoODEdata
Package Short Url https://bioconductor.org/packages/mitoODEdata/
Package Downloads Report Download Stats