proteoQC

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteoQC.

An R package for proteomics data quality control


Bioconductor version: 3.9

This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: Bo Wen <wenbo at genomics.cn>

Citation (from within R, enter citation("proteoQC")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("proteoQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proteoQC")
00 proteoQC introduction HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License LGPL-2
Depends R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown
System Requirements
URL https://github.com/wenbostar/proteoQC
See More
Suggests RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package proteoQC_1.20.0.tar.gz
Windows Binary proteoQC_1.20.0.zip
Mac OS X 10.11 (El Capitan) proteoQC_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/proteoQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/proteoQC
Bioc Package Browser https://code.bioconductor.org/browse/proteoQC/
Package Short Url https://bioconductor.org/packages/proteoQC/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive