TreeSummarizedExperiment

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TreeSummarizedExperiment.

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures


Bioconductor version: 3.9

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.

Author: Ruizhu Huang [aut, cre]

Maintainer: Ruizhu Huang <ruizhuRH at gmail.com>

Citation (from within R, enter citation("TreeSummarizedExperiment")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeSummarizedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeSummarizedExperiment")
Tree Aggregation HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.0.3
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL (>=2)
Depends R (>= 3.6.0), SingleCellExperiment, S4Vectors
Imports methods, utils, ape, dplyr, SummarizedExperiment
System Requirements
URL
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Suggests ggtree, BiocStyle, knitr, rmarkdown, testthat
Linking To
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Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TreeSummarizedExperiment_1.0.3.tar.gz
Windows Binary TreeSummarizedExperiment_1.0.3.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) TreeSummarizedExperiment_1.0.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/TreeSummarizedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TreeSummarizedExperiment
Bioc Package Browser https://code.bioconductor.org/browse/TreeSummarizedExperiment/
Package Short Url https://bioconductor.org/packages/TreeSummarizedExperiment/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive