AffyExpress

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see AffyExpress.

Affymetrix Quality Assessment and Analysis Tool


Bioconductor version: 3.9

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>

Maintainer: Xuejun Arthur Li <xueli at coh.org>

Citation (from within R, enter citation("AffyExpress")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AffyExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyExpress")
1. Primer PDF R Script
Reference Manual PDF

Details

biocViews Annotation, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Visualization
Version 1.50.0
In Bioconductor since BioC 2.1 (R-2.6) (16.5 years)
License LGPL
Depends R (>= 2.10), affy(>= 1.23.4), limma
Imports
System Requirements
URL
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Suggests simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AffyExpress_1.50.0.tar.gz
Windows Binary AffyExpress_1.50.0.zip
Mac OS X 10.11 (El Capitan) AffyExpress_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AffyExpress
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AffyExpress
Bioc Package Browser https://code.bioconductor.org/browse/AffyExpress/
Package Short Url https://bioconductor.org/packages/AffyExpress/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive