Changes in version 1.28.2 SIGNIFICANT USER-VISIBLE CHANGES - Implement a workaround to https://github.com/lawremi/rtracklayer/issues/83 which currently is limiting the ability to remotely access BigWig files using rtracklayer::import(). This affects the functions recount::expressed_regions(), recount::coverage_matrix(), and derfinder::getRegionCoverage() used in recountWorkflow. Changes in version 1.11.2 SIGNIFICANT USER-VISIBLE CHANGES - Documentation website is now available at http://LieberInstitute.github.io/recountWorkflow/. It gets updated with every commit on the master branch (bioc-devel) using GitHub Actions and pkgdown. - Added a NEWS.md file to track changes to the package. BUG FIXES - Fix the spelling of RIN to rin now that all SRA columns are in lower case. - Fix the DESCRIPTION file (had a missing comma). Changes in version 1.11.1 NEW FEATURES - Piggyback on GenomicState now that this package produces all the pieces needed for making the ER plots. - Potentially everything works on Windows now that rtracklayer::import.bw() seems to work there. But I haven't tested it. BUG FIXES - Update SRARunTable.txt reading code since they changed the format on delivered by SRA. Adjust variables accordingly. Changes in version 1.7.2 BUG FIXES - Fix the call to bumphunter::annotateTranscripts(). - See https://gist.github.com/lcolladotor/196dabeb1ac628c35656bfa94b5d9577 for more details. Changes in version 1.7.1 BUG FIXES - Fix the ftp url for the Gencode v25 gtf file. Changes in version 1.3.1 SIGNIFICANT USER-VISIBLE CHANGES - Use BiocManager Changes in version 0.99.0 NEW FEATURES - Created the workflow.