minionSummaryData

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see minionSummaryData.

Summarised MinION sequencing data published by Ashton et al. 2015


Bioconductor version: 3.10

Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("minionSummaryData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("minionSummaryData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minionSummaryData")
Creating example MinION summary dataset HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, SequencingData
Version 1.16.0
License MIT + file LICENSE
Depends R (>= 3.2.0)
Imports
System Requirements
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Suggests BiocStyle, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package minionSummaryData_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/minionSummaryData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/minionSummaryData
Package Short Url https://bioconductor.org/packages/minionSummaryData/
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