To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

In most cases, you don't need to download the package archive at all.

DECIPHER

   

This package is for version 2.9 of Bioconductor; for the stable, up-to-date release version, see DECIPHER.

Database Enabled Code for Ideal Probe Hybridization Employing R

Bioconductor version: 2.9

A toolset that assist in the design of hybridization probes.

Author: Erik Wright

Maintainer: Erik Wright <DECIPHER at cae.wisc.edu>

Citation (from within R, enter citation("DECIPHER")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DECIPHER")

 

PDF DECIPHERing.pdf
PDF FindChimeras.pdf
PDF   Reference Manual

Details

biocViews Clustering, DataImport, Genetics, Infrastructure, Microarray, QualityControl, Sequencing, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL-3
Depends R (>= 2.13.0), Biostrings(>= 2.16), RSQLite (>= 0.9), IRanges, stats
Imports Biostrings, RSQLite, IRanges, stats
LinkingTo Biostrings, RSQLite, IRanges, stats
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DECIPHER_1.0.0.tar.gz
Windows Binary DECIPHER_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/DECIPHER/tree/release-2.9
Package Short Url http://bioconductor.org/packages/DECIPHER/
Package Downloads Report Download Stats

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