################################################### ### chunk number 15: batchplot ################################################### #line 195 "vignettes/Rolexa/inst/doc/Rolexa-vignette.Rnw" par(mfrow=c(2,2),cex=.8,mar=c(4, 4, 2, 1)+.1) BatchAnalysis(run=rolenv,seq=res2$sread,scores=res2$entropy,what="length",main="Length distribution") BatchAnalysis(run=rolenv,seq=res$sread,scores=res$entropy,what="ratio",main="Complementary bases ratio") BatchAnalysis(run=rolenv,seq=res$sread,scores=res$entropy,what="iupac",main="IUPAC codes") BatchAnalysis(run=rolenv,seq=res2$sread,scores=res2$entropy,what="information",main="Base quality")