| Package | Maintainer | Title |
|---|---|---|
| baySeq | Thomas J. Hardcastle | Empirical Bayesian analysis of patterns of differential expression in count data |
| DESeq | Simon Anders | Digital gene expresion analysis based on the negative binomial distribution |
| edgeR | Mark Robinson , Davis McCarthy , Gordon Smyth | Empirical analysis of digital gene expression data in R |
| GEOquery | Sean Davis | Get data from NCBI Gene Expression Omnibus (GEO) |
| rnaSeqMap | Michal Okoniewski | rnaSeq analyses using xmapcore database |
| sagenhaft | Tim Beissbarth | Collection of functions for reading and comparing SAGE libraries |