| Package | Maintainer | Title |
|---|---|---|
| annaffy | Colin A. Smith | Annotation tools for Affymetrix biological metadata |
| annotate | Biocore Team c/o BioC user list | Annotation for microarrays |
| Category | Biocore Team c/o BioC user list | Category Analysis |
| clusterProfiler | Guangchuang Yu | statistical analysis and visulization of functional profiles for genes and gene clusters |
| gage | Weijun Luo | Generally Applicable Gene-set Enrichment for Pathway Analysis |
| globaltest | Jelle Goeman | Testing groups of covariates/features for association with a response variable, with applications to gene set testing |
| goProfiles | Alex Sanchez | goProfiles: an R package for the statistical analysis of functional profiles |
| GOSemSim | Guangchuang Yu | GO-terms Semantic Similarity Measures |
| goseq | Matthew Young | Gene Ontology analyser for RNA-seq and other length biased data |
| GOstats | Biocore Team c/o BioC user list | Tools for manipulating GO and microarrays. |
| goTools | Agnes Paquet | Functions for Gene Ontology database |
| RNAither | Nora Rieber | Statistical analysis of high-throughput RNAi screens |