Bioconductor Task View: BiologicalDomains

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Package Maintainer Title
aCGH Peter Dimitrov Classes and functions for Array Comparative Genomic Hybridization data.
Biostrings H. Pages String objects representing biological sequences, and matching algorithms
BSgenome H. Pages Infrastructure for Biostrings-based genome data packages
ChemmineR ChemmineR Team Analysis of Small Molecule and Screening Data
clippda Stephen Nyangoma A package for the clinical proteomic profiling data analysis
CRImage Henrik Failmezger , Yinyin Yuan CRImage a package to classify cells and calculate tumour cellularity
CSAR Jose M Muino Statistical tools for the analysis of ChIP-seq data
flowMeans Nima Aghaeepour Non-parametric Flow Cytometry Data Gating
gage Weijun Luo Generally Applicable Gene-set Enrichment for Pathway Analysis
GeneR Y. d'Aubenton-Carafa R for genes and sequences analysis
GeneRfold Antoine Lucas R for genes and sequences, using viennaRNA package (fold)
GeneticsDesign The R Genetics Project Functions for designing genetics studies
GeneticsPed David Henderson Pedigree and genetic relationship functions
genoCN Wei Sun genotyping and copy number study tools
genomeIntervals Julien Gagneur Operations on genomic intervals
genomes Chris Stubben Genome sequencing project metadata
GenomicFeatures Biocore Team c/o BioC user list Tools for making and manipulating transcript centric annotations
GenomicRanges Biocore Team c/o BioC user list Representation and manipulation of genomic intervals
GGBase Vince Carey infrastructure for genetics of gene expression (c) 2008 VJ Carey
GGtools Vince Carey software and data for genetics of gene expression (c) 2006 VJ Carey
GSRI Julian Gehring Gene Set Regulation Index
LiquidAssociation Yen-Yi Ho LiquidAssociation
logicFS Holger Schwender Identification of SNP Interactions
LPEadj Carl Murie A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.
MassArray Reid F. Thompson Analytical Tools for MassArray Data
MassSpecWavelet Pan Du Mass spectrum processing by wavelet-based algorithms
netresponse Leo Lahti NetResponse: functional network analysis
NuPoP Ji-Ping Wang An R package for nucleosome positioning prediction
PAnnBuilder Li Hong Protein annotation data package builder
PCpheno Nolwenn Le Meur Phenotypes and cellular organizational units
pint Olli-Pekka Huovilainen Pairwise INTegration of functional genomics data
plgem Norman Pavelka Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)
PLPE Soo-heang Eo Local Pooled Error Test for Differential Expression with Paired High-throughput Data
ppiStats Tony Chiang Protein-Protein Interaction Statistical Package
PROcess Xiaochun Li Ciphergen SELDI-TOF Processing
RMAPPER Heike Sichtig , Alberto Riva R interface to the MAPPER database of transcription factor binding sites
RpsiXML Jitao David Zhang R interface to PSI-MI 2.5 files
SamSPECTRAL Habil Zare Identifies cell population in flow cytometry data.
ScISI Tony Chiang In Silico Interactome
SLGI Nolwenn Le Meur Synthetic Lethal Genetic Interaction