| Package | Maintainer | Title |
|---|---|---|
| baySeq | Thomas J. Hardcastle | Empirical Bayesian analysis of patterns of differential expression in count data |
| ChIPpeakAnno | Lihua Julie Zhu | Batch annotation of the peaks identified from either ChIP-seq or ChIP-chip experiments. |
| ChIPsim | Peter Humburg | Simulation of ChIP-seq experiments |
| DEGseq | Likun Wang | Identify Differentially Expressed Genes from RNA-seq data |
| ShortRead | Biocore Team c/o BioC user list | Base classes and methods for high-throughput short-read sequencing data. |