Package: ALLMLL Version: 1.2.3 Depends: R (>= 2.4.0), affy Title: A subset of arrays from a large acute lymphoblastic leukemia (ALL) study Description: This package provides probe-level data for 20 HGU133A and 20 HGU133B arrays which are a subset of arrays from a large ALL study. The data is for the MLL arrays. This data was published in Mary E. Ross, Xiaodong Zhou, Guangchun Song, Sheila A. Shurtleff, Kevin Girtman, W. Kent Williams, Hsi-Che Liu, Rami Mahfouz, Susana C. Raimondi, Noel Lenny, Anami Patel, and James R. Downing (2003) Classification of pediatric acute lymphoblastic leukemia by gene expression profiling Blood 102: 2951-2959 biocViews: ExperimentData, Cancer, Leukemia Author: B. M. Bolstad License: GPL version 2.0 source.ver: src/contrib/ALLMLL_1.2.3.tar.gz win.binary.ver: bin/windows/contrib/2.9/ALLMLL_1.2.3.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/ALLMLL_1.2.3.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/ALLMLL_1.2.3.tgz Package: ALL Version: 1.4.5 Depends: Biobase (>= 1.12.0) Suggests: rpart Title: A data package Description: Data of T- and B-cell Acute Lymphocytic Leukemia from the Ritz Laboratory at the DFCI (includes Apr 2004 versions) biocViews: ExperimentData, Cancer, Leukemia Author: Xiaochun Li Maintainer: Xiaochun Li License: GPL source.ver: src/contrib/ALL_1.4.5.tar.gz win.binary.ver: bin/windows/contrib/2.9/ALL_1.4.5.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/ALL_1.4.5.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/ALL_1.4.5.tgz vignettes: vignettes/ALL/inst/doc/ALLintro.pdf Package: AffymetrixDataTestFiles Version: 0.1.1 Depends: R (>= 2.5.0) Title: Affymetrix data files (CEL, CDF, CHP, EXP, PSI) for testing Description: This package contains annotation data files and sample data files of Affymetrix file formats. The files originate from the Affymetrix' Fusion SDK distribution. biocViews: Microarray, OneChannel, AnnotationData, ExperimentData Author: Henrik Bengtsson, James Bullard, Kasper Daniel Hansen Maintainer: Henrik Bengtsson License: LGPL v2.1 source.ver: src/contrib/AffymetrixDataTestFiles_0.1.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/AffymetrixDataTestFiles_0.1.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/AffymetrixDataTestFiles_0.1.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/AffymetrixDataTestFiles_0.1.1.tgz Package: AmpAffyExample Version: 1.2.2 Depends: R (>= 2.4.0), affy (>= 1.2) Suggests: hgu133acdf Title: Example of Amplified Data Description: Six arrays. Three from amplified RNA, three from the typical procedure. biocViews: ExperimentData Author: Rafael A. Irizarry Maintainer: Rafael A. Irizarry License: LGPL version 2 or newer source.ver: src/contrib/AmpAffyExample_1.2.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/AmpAffyExample_1.2.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/AmpAffyExample_1.2.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/AmpAffyExample_1.2.2.tgz Package: CCl4 Version: 1.0.7 Depends: R (>= 2.6.0), Biobase (>= 1.15.3), limma Title: Carbon Tetrachloride (CCl4) treated hepatocytes Description: NChannelSet for rat hepatocytes treated with Carbon Tetrachloride (CCl4) data from LGC company. biocViews: ExperimentData Author: Audrey Kauffmann, Wolfgang Huber Maintainer: Audrey Kauffmann License: Artistic License 2.0 source.ver: src/contrib/CCl4_1.0.7.tar.gz win.binary.ver: bin/windows/contrib/2.9/CCl4_1.0.7.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/CCl4_1.0.7.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/CCl4_1.0.7.tgz vignettes: vignettes/CCl4/inst/doc/CCl4.pdf Package: CLL Version: 1.2.5 Depends: affy, Biobase Title: A Package for CLL Gene Expression Data Description: The CLL package contains the chronic lymphocytic leukemia (CLL) gene expression data. The CLL data had 24 samples that were either classified as progressive or stable in regards to disease progression. The data came from Dr. Sabina Chiaretti at Division of Hematology, Department of Cellular Biotechnologies and Hematology, University La Sapienza, Rome, Italy and Dr. Jerome Ritz at Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts. biocViews: ExperimentData, Cancer, Leukemia Author: Elizabeth Whalen Maintainer: Robert Gentleman License: LGPL source.ver: src/contrib/CLL_1.2.5.tar.gz win.binary.ver: bin/windows/contrib/2.9/CLL_1.2.5.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/CLL_1.2.5.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/CLL_1.2.5.tgz Package: GGdata Version: 1.0.0 Depends: R (>= 2.6.0), methods, Biobase (>= 1.11.41), GGBase, snpMatrix, illuminaHumanv1.db, AnnotationDbi Title: all 90 hapmap CEU samples, 47K expression, 4mm SNP Description: data exemplars dealing with hapmap SNP reports, GWAS, etc. biocViews: ExperimentData, HapMap Author: VJ Carey Maintainer: VJ Carey License: LGPL source.ver: src/contrib/GGdata_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/GGdata_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/GGdata_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/GGdata_1.0.0.tgz Package: GenomicFeatures Version: 0.0.1 Depends: Biobase (>= 1.12.0) Title: A transient package to store various Genomic Features Description: Various Genome-related features, such as gene boundaries, CpG islands, etc. biocViews: ExperimentData Author: D. Sarkar Maintainer: Deepayan Sarkar License: Artistic source.ver: src/contrib/GenomicFeatures_0.0.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/GenomicFeatures_0.0.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/GenomicFeatures_0.0.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/GenomicFeatures_0.0.1.tgz Package: HEEBOdata Version: 1.0.0 Title: HEEBO set and HEEBO controls. Description: R objects describing the HEEBO oligo set. biocViews: ExperimentData Author: Agnes Paquet Maintainer: Agnes Paquet URL: http://alizadehlab.stanford.edu/ http://arrays.ucsf.edu/ License: LGPL source.ver: src/contrib/HEEBOdata_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/HEEBOdata_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/HEEBOdata_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/HEEBOdata_1.0.0.tgz Package: HIVcDNAvantWout03 Version: 1.2.2 Title: T cell line infections with HIV-1 LAI (BRU) Description: The expression levels of approximately 4600 cellular RNA transcripts were assessed in CD4+ T cell lines at different times after infection with HIV-1BRU using DNA microarrays. This data corresponds to the first block of a 12 block array image (001030_08_1.GEL) in the first data set (2000095918 A) in the first experiment (CEM LAI vs HI-LAI 24hr). There are two data sets, which are part of a dye-swap experiment with replicates, representing the Cy3 (green) absorption intensities for channel 1 (hiv1raw) and the Cy5 (red) absorption intensities for channel 2 (hiv2raw). biocViews: ExperimentData, HIV Author: Dr. Angelique van't Wout, Department of Microbiology, University of Washington Maintainer: Chris Fraley URL: http://expression.microslu.washington.edu/expression/vantwoutjvi2002.html License: GPL version 2 or higher source.ver: src/contrib/HIVcDNAvantWout03_1.2.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/HIVcDNAvantWout03_1.2.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/HIVcDNAvantWout03_1.2.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/HIVcDNAvantWout03_1.2.2.tgz vignettes: vignettes/HIVcDNAvantWout03/inst/doc/hivData.pdf Package: ITALICSData Version: 2.0.1 Depends: R (>= 2.0.0) Title: ITALICSData Description: Data needed to use the ITALICS package biocViews: ExperimentData Author: Guillem Rigaill Maintainer: Guillem Rigaill URL: http://bioinfo.curie.fr License: GPL source.ver: src/contrib/ITALICSData_2.0.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/ITALICSData_2.0.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/ITALICSData_2.0.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/ITALICSData_2.0.1.tgz Package: Iyer517 Version: 1.4.2 Depends: Biobase (>= 1.12.0) Title: exprSets for Iyer, Eisen et all 1999 Science paper Description: representation of public Iyer data from http://genome-www.stanford.edu/serum/clusters.html biocViews: ExperimentData Author: Vishy Iyer Maintainer: Vince Carey License: unknown source.ver: src/contrib/Iyer517_1.4.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/Iyer517_1.4.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/Iyer517_1.4.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/Iyer517_1.4.2.tgz vignettes: vignettes/Iyer517/inst/doc/Iyer517.pdf Package: MAQCsubsetAFX Version: 1.0.0 Depends: Biobase Title: MAQC data subset for the Affymetrix platform Description: MAQC data subset for the Affymetrix platform biocViews: Microarray, ExperimentData Author: Laurent Gatto Maintainer: Laurent Gatto URL: http://www.slashhome.be/MAQCsubsetAFX.php License: The Artistic License, Version 2.0 source.ver: src/contrib/MAQCsubsetAFX_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/MAQCsubsetAFX_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/MAQCsubsetAFX_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/MAQCsubsetAFX_1.0.0.tgz vignettes: vignettes/MAQCsubsetAFX/inst/doc/MAQCsubsetAFX.pdf Package: MAQCsubsetILM Version: 1.0.0 Depends: Biobase Title: MAQC data subset for the Illumina platform Description: MAQC data subset for the Illumina platform biocViews: Microarray, ExperimentData Author: Laurent Gatto Maintainer: Laurent Gatto URL: http://www.slashhome.be/MAQCsubsetILM.php License: The Artistic License, Version 2.0 source.ver: src/contrib/MAQCsubsetILM_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/MAQCsubsetILM_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/MAQCsubsetILM_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/MAQCsubsetILM_1.0.0.tgz vignettes: vignettes/MAQCsubsetILM/inst/doc/MAQCsubsetILM.pdf Package: MAQCsubset Version: 1.0.14 Depends: Biobase, methods Suggests: genefilter Title: Experimental Data Package: MAQCsubset Description: Data Package automatically created on Sun Nov 19 15:59:29 2006. biocViews: ExperimentData Author: VJ Carey Maintainer: VJ Carey License: The Artistic License, Version 2.0 source.ver: src/contrib/MAQCsubset_1.0.14.tar.gz win.binary.ver: bin/windows/contrib/2.9/MAQCsubset_1.0.14.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/MAQCsubset_1.0.14.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/MAQCsubset_1.0.14.tgz vignettes: vignettes/MAQCsubset/inst/doc/maqcNotes.pdf Package: MEEBOdata Version: 1.0.0 Title: MEEBO set and MEEBO controls. Description: R objects describing the MEEBO set. biocViews: ExperimentData Author: Agnes Paquet Maintainer: Agnes Paquet URL: http://alizadehlab.stanford.edu/ http://arrays.ucsf.edu/ License: LGPL source.ver: src/contrib/MEEBOdata_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/MEEBOdata_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/MEEBOdata_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/MEEBOdata_1.0.0.tgz Package: Neve2006 Version: 0.1.6 Depends: R (>= 2.5.0), tools, methods, utils, Biobase (>= 1.14.0), hgu133a.db, annotate Title: expression and CGH data on breast cancer cell lines Description: Experimental organization of combined expression and CGH data biocViews: ExperimentData, Breast_Cancer Author: M. Neve et al. in Gray Lab at LBL Maintainer: VJ Carey License: The Artistic License, Version 2.0 source.ver: src/contrib/Neve2006_0.1.6.tar.gz win.binary.ver: bin/windows/contrib/2.9/Neve2006_0.1.6.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/Neve2006_0.1.6.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/Neve2006_0.1.6.tgz vignettes: vignettes/Neve2006/inst/doc/neve06notes.pdf Package: ProData Version: 1.0.2 Depends: R (>= 2.4.0), Biobase (>= 1.12.0) Title: SELDI-TOF data of Breast cancer samples Description: A data package of SELDI-TOF protein mass spectrometry data of 167 breast cancer and normal samples. biocViews: ExperimentData, Cancer, Breast Author: Xiaochun Li Maintainer: Xiaochun Li License: GPL source.ver: src/contrib/ProData_1.0.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/ProData_1.0.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/ProData_1.0.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/ProData_1.0.2.tgz Package: SNAData Version: 1.8.1 Depends: R (>= 2.4.0), graph Suggests: Rgraphviz Title: Social Networks Analysis Data Examples Description: Data from Wasserman & Faust (1999) "Social Network Analysis" biocViews: ExperimentData Author: Denise Scholtens Maintainer: Denise Scholtens License: LGPL source.ver: src/contrib/SNAData_1.8.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/SNAData_1.8.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/SNAData_1.8.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/SNAData_1.8.1.tgz vignettes: vignettes/SNAData/inst/doc/SNAData.pdf Package: SpikeInSubset Version: 1.2.7 Depends: R (>= 2.4.0), Biobase (>= 1.12.0), affy (>= 1.0) Title: Part of Affymetrix's Spike-In Experiment Data Description: Includes probe-level and expression data for the HGU133 and HGU95 spike-in experiments biocViews: ExperimentData Author: Rafael Irizarry and Zhijin Wu Maintainer: Rafael A. Irizarry License: LGPL source.ver: src/contrib/SpikeInSubset_1.2.7.tar.gz win.binary.ver: bin/windows/contrib/2.9/SpikeInSubset_1.2.7.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/SpikeInSubset_1.2.7.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/SpikeInSubset_1.2.7.tgz Package: SpikeIn Version: 1.4.1 Depends: R (>= 1.6), affy (>= 1.0) Title: Affymetrix Spike-In Experiment Data Description: Contains the HGU133 and HGU95 spikein experiment data. biocViews: ExperimentData Author: Rafael Irizarry Maintainer: Rafael A. Irizarry License: The Artistic License, Version 2.0 source.ver: src/contrib/SpikeIn_1.4.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/SpikeIn_1.4.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/SpikeIn_1.4.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/SpikeIn_1.4.1.tgz Package: TargetSearchData Version: 1.0.0 Depends: TargetSearch Title: Example GC-MS data for TargetSearch Package Description: This package provides example GC-MS data for TargetSearch Package. biocViews: ExperimentData Author: Alvaro Cuadros-Inostroza, Henning Redestig, Matt Hannah Maintainer: Alvaro Cuadros-Inostroza Henning Redestig , Matt Hannah License: GPL version 2 or newer source.ver: src/contrib/TargetSearchData_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/TargetSearchData_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/TargetSearchData_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/TargetSearchData_1.0.0.tgz Package: XhybCasneuf Version: 1.0.4 Depends: R (>= 2.4.0), affy , ath1121501cdf , tinesath1cdf , RColorBrewer , methods, grid Title: EBI/PSB cross-hybridisation study package Description: Cross-hybridisation study on the ATH1 Affymetrix GeneChip biocViews: ExperimentData Author: Tineke Casneuf Maintainer: Tineke Casneuf License: Artistic source.ver: src/contrib/XhybCasneuf_1.0.4.tar.gz win.binary.ver: bin/windows/contrib/2.9/XhybCasneuf_1.0.4.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/XhybCasneuf_1.0.4.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/XhybCasneuf_1.0.4.tgz vignettes: vignettes/XhybCasneuf/inst/doc/Rplots.pdf, vignettes/XhybCasneuf/inst/doc/Xhyb.pdf Package: affydata Version: 1.11.8 Depends: R (>= 2.4.0), affy (>= 1.13.20) Suggests: hgu95av2cdf, hgu133acdf Title: Affymetrix Data for Demonstration Purpose Description: Example datasets of a slightly large size. They represent 'real world examples', unlike the artificial examples included in the package affy. biocViews: ExperimentData, OneChannel, Microarray Author: Bioconductor Maintainer: Laurent License: GPL version 2 or newer source.ver: src/contrib/affydata_1.11.8.tar.gz win.binary.ver: bin/windows/contrib/2.9/affydata_1.11.8.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/affydata_1.11.8.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/affydata_1.11.8.tgz vignettes: vignettes/affydata/inst/doc/affydata.pdf Package: beta7 Version: 1.0.0 Depends: R (>= 2.4.0), marray Title: Rodriguez et al. (2004) Differential Gene Expression by Memory/Effector T Helper Cells Bearing the Gut-Homing Receptor Integrin alpha4 beta7. Description: Data from 6 gpr files aims to identify differential expressed genes between the beta 7+ and beta 7- memory T helper cells. biocViews: ExperimentData Author: Jean Yang Maintainer: Jean Yang License: LGPL source.ver: src/contrib/beta7_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/beta7_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/beta7_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/beta7_1.0.0.tgz Package: bronchialIL13 Version: 1.0-3 Depends: affy Title: time course experiment involving il13 Description: derived from CNMC (pepr.cnmcresearch.org) http://pepr.cnmcresearch.org/browse.do?action=list_prj_exp&projectId=95 Human Bronchial Cell line A549 biocViews: ExperimentData, TimeCourse Author: Vince Carey Maintainer: Vince Carey URL: http://www.biostat.harvard.edu/~carey License: GPL2 source.ver: src/contrib/bronchialIL13_1.0-3.tar.gz win.binary.ver: bin/windows/contrib/2.9/bronchialIL13_1.0-3.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/bronchialIL13_1.0-3.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/bronchialIL13_1.0-3.tgz Package: ccTutorial Version: 1.0.4 Depends: R (>= 2.8.0), Ringo(>= 1.6.0), affy Suggests: biomaRt, topGO, Biobase, xtable Title: Data package for ChIP-chip tutorial Description: This is a data package that accompanies a ChIP-chip tutorial, which has been published in PLoS Computational Biology. The data and source code in this package allow the reader to completely reproduce the steps in the tutorial. biocViews: ExperimentData, ChIPchipData Author: Joern Toedling, Wolfgang Huber Maintainer: Joern Toedling License: Artistic License 2.0 source.ver: src/contrib/ccTutorial_1.0.4.tar.gz win.binary.ver: bin/windows/contrib/2.9/ccTutorial_1.0.4.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/ccTutorial_1.0.4.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/ccTutorial_1.0.4.tgz vignettes: vignettes/ccTutorial/inst/doc/ccTutorial.pdf, vignettes/ccTutorial/inst/doc/ccTutorialSupplement.pdf Package: colonCA Version: 1.4.4 Depends: Biobase (>= 1.11.12) Title: exprSet for Alon et al. (1999) colon cancer data Description: exprSet for Alon et al. (1999) colon cancer data biocViews: ExperimentData, Cancer, Colon Author: Sylvia Merk Maintainer: W Sylvia Merk License: unknown source.ver: src/contrib/colonCA_1.4.4.tar.gz win.binary.ver: bin/windows/contrib/2.9/colonCA_1.4.4.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/colonCA_1.4.4.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/colonCA_1.4.4.tgz Package: davidTiling Version: 1.2.9 Depends: tilingArray, GO.db Title: Data and analysis scripts for David, Huber et al. yeast tiling array paper Description: This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory. biocViews: ExperimentData Author: Wolfgang Huber , Joern Toedling Maintainer: Wolfgang Huber URL: http://www.ebi.ac.uk/huber License: LGPL source.ver: src/contrib/davidTiling_1.2.9.tar.gz win.binary.ver: bin/windows/contrib/2.9/davidTiling_1.2.9.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/davidTiling_1.2.9.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/davidTiling_1.2.9.tgz Package: dyebiasexamples Version: 1.0.3 Depends: R (>= 1.4.1), marray Suggests: dyebias, GEOquery, convert, Biobase Title: Example data for the dyebias package, which implements the GASSCO method. Description: Data for the dyebias package, consisting of 4 self-self hybrizations of self-spotted yeast slides, as well as data from Array Express accession E-MTAB-32 biocViews: Microarray, TwoChannel, ExperimentData Author: Philip Lijnzaad and Thanasis Margaritis Maintainer: Philip Lijnzaad URL: http://www.holstegelab.nl/publications/margaritis_lijnzaad License: GPL v3 source.ver: src/contrib/dyebiasexamples_1.0.3.tar.gz win.binary.ver: bin/windows/contrib/2.9/dyebiasexamples_1.0.3.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/dyebiasexamples_1.0.3.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/dyebiasexamples_1.0.3.tgz Package: ecoliLeucine Version: 1.2.3 Depends: R (>= 1.9.0), affy (>= 1.13), ecolicdf Title: Experimental data with Affymetrix E. coli chips Description: Experimental data with Affymetrix E. coli chips, as reported in She-pin Hung, Pierre Baldi, and G. Wesley Hatfield, J. Biol. Chem., Vol. 277, Issue 43, 40309-40323, October 25, 2002 biocViews: ExperimentData, E.ColiData Author: Laurent Gautier Maintainer: Laurent Gautier License: GPL version 2 or newer source.ver: src/contrib/ecoliLeucine_1.2.3.tar.gz win.binary.ver: bin/windows/contrib/2.9/ecoliLeucine_1.2.3.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/ecoliLeucine_1.2.3.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/ecoliLeucine_1.2.3.tgz Package: encoDnaseI Version: 0.1-0 Depends: R (>= 2.6.0), methods, Biobase, lattice, GGtools, GGBase, snpMatrix Suggests: GGdata Title: data provided by UCSC for Cd4 raw measures of DnaseI hypersensitivity Description: data provided by UCSC for Cd4 raw measures of DnaseI hypersensitivity biocViews: ExperimentData Author: VJ Carey Maintainer: VJ Carey License: Artistic 2.0 source.ver: src/contrib/encoDnaseI_0.1-0.tar.gz win.binary.ver: bin/windows/contrib/2.9/encoDnaseI_0.1-0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/encoDnaseI_0.1-0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/encoDnaseI_0.1-0.tgz vignettes: vignettes/encoDnaseI/inst/doc/dnaseUse.pdf Package: estrogen Version: 1.8.3 Depends: R (>= 1.9.0), affy (>= 1.4) Suggests: Biobase (>= 1.13.16) Title: 2x2 factorial design exercise for the Bioconductor short course Description: Data from 8 Affymetrix genechips, looking at a 2x2 factorial design (with 2 repeats per level) biocViews: ExperimentData Author: Wolfgang Huber, Robert Gentleman Maintainer: R. Gentleman License: LGPL source.ver: src/contrib/estrogen_1.8.3.tar.gz win.binary.ver: bin/windows/contrib/2.9/estrogen_1.8.3.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/estrogen_1.8.3.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/estrogen_1.8.3.tgz vignettes: vignettes/estrogen/inst/doc/estrogen.pdf Package: faahKO Version: 1.2.1 Suggests: xcms Title: Saghatelian et al. (2004) FAAH knockout LC/MS data Description: Positive ionization mode data in NetCDF file format. Centroided subset from 200-600 m/z and 2500-4500 seconds. Data originally reported in "Assignement of Endogenous Substrates to Enzymes by Global Metabolite Profiling" Biochemistry; 2004; 43(45). Also includes detected peaks in an xcmsSet. biocViews: ExperimentData Author: Colin A. Smith Maintainer: Colin A. Smith URL: http://dx.doi.org/10.1021/bi0480335 License: unknown source.ver: src/contrib/faahKO_1.2.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/faahKO_1.2.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/faahKO_1.2.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/faahKO_1.2.1.tgz Package: facsDorit Version: 1.4.1 Depends: R (>= 1.9.1), prada (>= 1.0.5) Title: DKFZ FACS example data Description: FACS example data for cell-based assays. This data is used in the examples and vignettes of the package prada. biocViews: ExperimentData Author: Florian Hahne Maintainer: Florian Hahne URL: http://www.dkfz.de/mga License: GPL2 source.ver: src/contrib/facsDorit_1.4.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/facsDorit_1.4.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/facsDorit_1.4.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/facsDorit_1.4.1.tgz Package: fibroEset Version: 1.4.2 Depends: Biobase (>= 1.12.0) Title: exprSet for Karaman et al. (2003) fibroblasts data Description: exprSet for Karaman et al. (2003) human, bonobo and gorilla fibroblasts data biocViews: ExperimentData Author: Sylvia Merk Maintainer: Sylvia Merk License: unknown source.ver: src/contrib/fibroEset_1.4.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/fibroEset_1.4.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/fibroEset_1.4.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/fibroEset_1.4.2.tgz Package: gaschYHS Version: 1.0.0 Depends: Biobase (>= 1.12.0) Title: ExpressionSet for response of yeast to heat shock and other environmental stresses Description: Data from PMID 11102521 biocViews: ExperimentData Author: Audrey Gasch and colleagues Maintainer: Vince Carey License: unknown, repackages data on http://genome-www.stanford.edu/yeast_stress/data/ rawdata/complete_dataset.txt source.ver: src/contrib/gaschYHS_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/gaschYHS_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/gaschYHS_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/gaschYHS_1.0.0.tgz Package: gatingMLData Version: 1.0.2 Depends: R (>= 1.9.0) Suggests: flowUtils Title: Data and XML files for GatingML Test suite Description: Test data & XML files for Testing compliance with the GatingML 1.5 standards in package flowUtils. biocViews: ExperimentData Author: Nishant Gopalakrishnan Maintainer: Nishant Gopalakrishnan License: GPL source.ver: src/contrib/gatingMLData_1.0.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/gatingMLData_1.0.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/gatingMLData_1.0.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/gatingMLData_1.0.2.tgz Package: gcspikelite Version: 1.0.2 Depends: R (>= 2.5.0) Title: Spike-in data for GC/MS data and methods within flagme Description: Spike-in data for GC/MS data and methods within flagme Author: Mark Robinson Maintainer: Mark Robinson License: LGPL source.ver: src/contrib/gcspikelite_1.0.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/gcspikelite_1.0.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/gcspikelite_1.0.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/gcspikelite_1.0.2.tgz Package: golubEsets Version: 1.4.5 Depends: Biobase (>= 1.12.0) Title: exprSets for golub leukemia data Description: representation of public golub data with some covariate data of provenance unknown to the maintainer at present; now employs ExpressionSet format biocViews: ExperimentData, Cancer, Leukemia Author: Todd Golub Maintainer: Vince Carey License: unknown source.ver: src/contrib/golubEsets_1.4.5.tar.gz win.binary.ver: bin/windows/contrib/2.9/golubEsets_1.4.5.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/golubEsets_1.4.5.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/golubEsets_1.4.5.tgz Package: hapmap100khind Version: 1.3.2 Suggests: oligo Title: Sample data - Hapmap 100K HIND Affymetrix Description: Sample dataset obtained from http://www.hapmap.org biocViews: ExperimentData, HapMap Author: Hapmap Consortium Maintainer: Benilton Carvalho License: GPL source.ver: src/contrib/hapmap100khind_1.3.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/hapmap100khind_1.3.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/hapmap100khind_1.3.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/hapmap100khind_1.3.2.tgz Package: hapmap100kxba Version: 1.3.2 Suggests: oligo Title: Sample data - Hapmap 100K XBA Affymetrix Description: Sample dataset obtained from http://www.hapmap.org biocViews: ExperimentData, HapMap Author: Hapmap Consortium Maintainer: Benilton Carvalho License: GPL source.ver: src/contrib/hapmap100kxba_1.3.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/hapmap100kxba_1.3.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/hapmap100kxba_1.3.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/hapmap100kxba_1.3.2.tgz Package: hapmap500knsp Version: 1.3.2 Suggests: oligo Title: Sample data - Hapmap 500K NSP Affymetrix Description: Sample dataset obtained from http://www.hapmap.org biocViews: ExperimentData, HapMap Author: Hapmap Consortium Maintainer: Benilton Carvalho License: GPL source.ver: src/contrib/hapmap500knsp_1.3.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/hapmap500knsp_1.3.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/hapmap500knsp_1.3.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/hapmap500knsp_1.3.2.tgz Package: hapmap500ksty Version: 1.3.2 Suggests: oligo Title: Sample data - Hapmap 500K STY Affymetrix Description: Sample dataset obtained from http://www.hapmap.org biocViews: ExperimentData, HapMap Author: Hapmap Consortium Maintainer: Benilton Carvalho License: GPL source.ver: src/contrib/hapmap500ksty_1.3.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/hapmap500ksty_1.3.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/hapmap500ksty_1.3.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/hapmap500ksty_1.3.2.tgz Package: hapmapsnp5 Version: 1.3.2 Suggests: oligo Title: Sample data - Hapmap SNP 5.0 Affymetrix Description: Sample dataset obtained from http://www.hapmap.org biocViews: ExperimentData, HapMap Author: Hapmap Consortium Maintainer: Benilton Carvalho License: GPL source.ver: src/contrib/hapmapsnp5_1.3.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/hapmapsnp5_1.3.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/hapmapsnp5_1.3.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/hapmapsnp5_1.3.2.tgz Package: hapmapsnp6 Version: 1.3.2 Suggests: oligo Title: Sample data - Hapmap SNP 5.0 Affymetrix Description: Sample dataset obtained from http://www.hapmap.org biocViews: ExperimentData, HapMap Author: Hapmap Consortium Maintainer: Benilton Carvalho License: GPL source.ver: src/contrib/hapmapsnp6_1.3.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/hapmapsnp6_1.3.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/hapmapsnp6_1.3.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/hapmapsnp6_1.3.2.tgz Package: harbChIP Version: 1.0.0 Depends: R (>= 2.6.0), tools, utils, IRanges, Biobase, Biostrings Imports: methods, stats Title: Experimental Data Package: harbChIP Description: data from a yeast ChIP-chip experiment biocViews: ExperimentData, Yeast, ChIPchip Author: VJ Carey Maintainer: VJ Carey License: The Artistic License, Version 2.0 source.ver: src/contrib/harbChIP_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/harbChIP_1.0.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/harbChIP_1.0.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/harbChIP_1.0.0.tgz vignettes: vignettes/harbChIP/inst/doc/yeastUpstream.pdf Package: hgu2beta7 Version: 1.2.2 Depends: R (>= 2.0.0) Title: A data package containing annotation data for hgu2beta7 Description: Annotation data file for hgu2beta7 assembled using data from public data repositories biocViews: AnnotationData Author: Chenwei Lin Maintainer: Biocore Team c/o BioC user list License: Artistic-2.0 source.ver: src/contrib/hgu2beta7_1.2.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/hgu2beta7_1.2.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/hgu2beta7_1.2.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/hgu2beta7_1.2.2.tgz Package: hmyriB36 Version: 0.99.1 Depends: R (>= 2.7.0), methods, GGBase(>= 2.99.0) Suggests: GGtools Title: YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes Description: YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes biocViews: Statistics, ExperimentData Author: Vincent Carey Maintainer: Vincent Carey License: Artistic 2.0 source.ver: src/contrib/hmyriB36_0.99.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/hmyriB36_0.99.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/hmyriB36_0.99.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/hmyriB36_0.99.1.tgz Package: humanStemCell Version: 0.2.2 Depends: Biobase, hgu133plus2.db Title: Human Stem Cells time course experiment Description: Affymetrix time course experiment on human stem cells (two time points: undifferentiated and differentiated). biocViews: ExperimentData, StemCells Author: R. Gentleman, N. Le Meur, M. Tewari Maintainer: R. Gentleman License: Artistic-2.0 source.ver: src/contrib/humanStemCell_0.2.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/humanStemCell_0.2.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/humanStemCell_0.2.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/humanStemCell_0.2.2.tgz Package: kidpack Version: 1.5.3 Depends: R (>= 2.6.0), Biobase (>= 1.15.0) Title: DKFZ kidney package Description: kidney microarray data biocViews: ExperimentData, Cancer, Kidney Author: Wolfgang Huber Maintainer: Wolfgang Huber URL: http://www.dkfz.de/mga License: GPL2 source.ver: src/contrib/kidpack_1.5.3.tar.gz win.binary.ver: bin/windows/contrib/2.9/kidpack_1.5.3.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/kidpack_1.5.3.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/kidpack_1.5.3.tgz vignettes: vignettes/kidpack/inst/doc/kidpack.pdf Package: lumiBarnes Version: 1.3.3 Depends: R (>= 2.0), lumi (>= 1.1.0) Title: Barnes Benchmark Illumina Tissues Titration Data Description: The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package). biocViews: ExperimentData Author: Pan Du Maintainer: Pan Du License: LGPL source.ver: src/contrib/lumiBarnes_1.3.3.tar.gz win.binary.ver: bin/windows/contrib/2.9/lumiBarnes_1.3.3.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/lumiBarnes_1.3.3.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/lumiBarnes_1.3.3.tgz Package: lungExpression Version: 0.0.8 Depends: R (>= 2.4.0), Biobase (>= 1.13.0) Title: ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paper Description: Data from three large lung cancer studies provided as ExpressionSets biocViews: ExperimentData, Cancer, Lung Author: Robert Scharpf , Simens Zhong , Giovanni Parmigiani Maintainer: Robert Scharpf License: GPL version 2 or newer source.ver: src/contrib/lungExpression_0.0.8.tar.gz win.binary.ver: bin/windows/contrib/2.9/lungExpression_0.0.8.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/lungExpression_0.0.8.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/lungExpression_0.0.8.tgz Package: maqcExpression4plex Version: 1.2 Suggests: oligo, makePlatformDesign Title: Sample Expression Data - MAQC / HG18 - NimbleGen Description: Data from human (HG18) 4plex NimbleGen array. It has 24k genes with 3 60mer probes per gene. biocViews: ExperimentData Author: NimbleGen Systems Maintainer: Benilton Carvalho License: GPL source.ver: src/contrib/maqcExpression4plex_1.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/maqcExpression4plex_1.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/maqcExpression4plex_1.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/maqcExpression4plex_1.2.tgz Package: msdata Version: 0.1.3 Suggests: xcms Title: Various Mass Spectrometry raw data example files Description: Ion Trap positive ionization mode data in mzData file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshhold 100.000. Extracts from FTICR Apex III, m/z 400-450 biocViews: ExperimentData Author: Steffen Neumann Maintainer: Steffen Neumann License: GPL2 (>=2) source.ver: src/contrib/msdata_0.1.3.tar.gz win.binary.ver: bin/windows/contrib/2.9/msdata_0.1.3.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/msdata_0.1.3.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/msdata_0.1.3.tgz Package: mvoutData Version: 0.99.1 Depends: R (>= 2.6.0), methods, Biobase, affy, lumi Title: affy and illumina raw data for assessing outlier detector performance Description: affy and illumina raw data for assessing outlier detector performance biocViews: ExperimentData Author: VJ Carey Maintainer: VJ Carey License: Artistic 2.0 source.ver: src/contrib/mvoutData_0.99.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/mvoutData_0.99.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/mvoutData_0.99.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/mvoutData_0.99.1.tgz Package: ppiData Version: 0.1.13 Depends: Rgraphviz, graph Suggests: org.Sc.sgd.db, ppiStats Title: A package that contains the bait to prey directed graphs for protein-protein interactions. Description: This package contains the directed graphs for protein interaction data as derived from Y2H and APMS as well as the code used to obtain the y2h data from IntAct Repository. biocViews: ExperimentData Author: Tony Chiang Maintainer: Tony Chiang License: Artistic, Version 2.0 source.ver: src/contrib/ppiData_0.1.13.tar.gz win.binary.ver: bin/windows/contrib/2.9/ppiData_0.1.13.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/ppiData_0.1.13.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/ppiData_0.1.13.tgz vignettes: vignettes/ppiData/inst/doc/ppiStats.pdf Package: pumadata Version: 1.0.1 Depends: R (>= 2.4.0), Biobase, puma Title: Various data sets for use with the puma package Description: This is a simple data package including various data sets derived from the estrogen data for use with the puma (Propagating Uncertainty in Microarray Analysis) package. biocViews: ExperimentData Author: Richard Pearson Maintainer: Richard Pearson URL: http://umber.sbs.man.ac.uk/resources/puma License: LGPL source.ver: src/contrib/pumadata_1.0.1.tar.gz win.binary.ver: bin/windows/contrib/2.9/pumadata_1.0.1.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/pumadata_1.0.1.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/pumadata_1.0.1.tgz vignettes: vignettes/pumadata/inst/doc/pumadata.pdf Package: rfcdmin Version: 1.6.8 Depends: R (>= 2.4.0) Suggests: rflowcyt Title: Minimal Data Library for RFlowCyt examples Description: Provides basic data sets for examples and should be loaded before the package 'rflowcyt' and 'rfcprim'. biocViews: ExperimentData, FlowCytData Author: A.J. Rossini, J.Y. Wan, N. Le Meur and Zoe Moodie Maintainer: N. Le Meur URL: http://www.analytics.washington.edu/downloads/rflowcyt/ License: GPL 2.0 source.ver: src/contrib/rfcdmin_1.6.8.tar.gz win.binary.ver: bin/windows/contrib/2.9/rfcdmin_1.6.8.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/rfcdmin_1.6.8.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/rfcdmin_1.6.8.tgz Package: stjudem Version: 1.2.0 Depends: R (>= 2.0.0), utils Title: Microarray Data from Yeoh et al. in MACAT format Description: This is a microarray data set on acute lymphoblastic leukemia, published in 2002 (Yeoh et al.Cancer Cell 2002). The experiments were conducted in the St.Jude Children's Research Hospital, Memphis, Tenessee, USA. The raw data was preprocessed by variance stabilizing normalization (Huber et al.) on probe and subsequent summarization of probe expression values into probe set expression values using median polish. biocViews: ExperimentData Author: Benjamin Georgi, Matthias Heinig, Sebastian Schmeier, Joern Toedling Maintainer: Joern Toedling License: LGPL version 2 or above source.ver: src/contrib/stjudem_1.2.0.tar.gz win.binary.ver: bin/windows/contrib/2.9/stjudem_1.2.0.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/stjudem_1.2.0.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/stjudem_1.2.0.tgz Package: tinesath1cdf Version: 1.0.2 Title: tinesath1cdf Description: A package containing an environment represeting the newcdf/tinesATH1.cdf.cdf file. biocViews: AnnotationData, AffymetrixChip, ath1121501, Arabidopsis_thaliana Author: Tine Casneuf Maintainer: Tine Casneuf License: artistic source.ver: src/contrib/tinesath1cdf_1.0.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/tinesath1cdf_1.0.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/tinesath1cdf_1.0.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/tinesath1cdf_1.0.2.tgz Package: tinesath1probe Version: 1.0.2 Depends: R (>= 1.6), matchprobes (>= 1.4.0) Title: Probe sequence data for microarrays of type tinesath1 Description: This package was automatically created by package matchprobes version 1.4.0. The probe sequence data was obtained from http://www.affymetrix.com. biocViews: AnnotationData, AffymetrixChip, tinesath1, Arabidopsis thaliana Author: The Bioconductor Project www.bioconductor.org Maintainer: Tine Casneuf License: LGPL source.ver: src/contrib/tinesath1probe_1.0.2.tar.gz win.binary.ver: bin/windows/contrib/2.9/tinesath1probe_1.0.2.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/tinesath1probe_1.0.2.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/tinesath1probe_1.0.2.tgz Package: yeastCC Version: 1.2.8 Depends: Biobase (>= 1.12.0) Title: Spellman et al. (1998) yeast cell cycle microarray data Description: exprSet for Spellman et al. (1998) yeast cell cycle microarray experiment biocViews: ExperimentData, Yeast Author: Sandrine Dudoit Maintainer: Sandrine Dudoit License: unknown source.ver: src/contrib/yeastCC_1.2.8.tar.gz win.binary.ver: bin/windows/contrib/2.9/yeastCC_1.2.8.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/yeastCC_1.2.8.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/yeastCC_1.2.8.tgz vignettes: vignettes/yeastCC/inst/doc/Spellmanetal.pdf Package: yeastExpData Version: 0.9.16 Depends: R (>= 2.4), graph (>= 1.9.26) Suggests: Biobase, GO.db, RBGL, org.Sc.sgd.db Title: Yeast Experimental Data Description: A collection of different sets of experimental data from yeast. biocViews: ExperimentData, Yeast Author: R. Gentleman Maintainer: R. Gentleman License: GPL source.ver: src/contrib/yeastExpData_0.9.16.tar.gz win.binary.ver: bin/windows/contrib/2.9/yeastExpData_0.9.16.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/yeastExpData_0.9.16.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/yeastExpData_0.9.16.tgz vignettes: vignettes/yeastExpData/inst/doc/yeastExample.pdf Package: yeastGSData Version: 0.1.4 Title: Yeast Gold Standard Data Description: A collection of so-called gold (and other) standard data sets biocViews: ExperimentData, Yeast Author: R. Gentleman Maintainer: R. Gentleman License: Artistic source.ver: src/contrib/yeastGSData_0.1.4.tar.gz win.binary.ver: bin/windows/contrib/2.9/yeastGSData_0.1.4.zip mac.binary.universal.ver: bin/macosx/universal/contrib/2.9/yeastGSData_0.1.4.tgz mac.binary.leopard.ver: bin/macosx/leopard/contrib/2.9/yeastGSData_0.1.4.tgz